Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 183 4e-41 >seq3 Length=15630833 Score = 183 bits (202), Expect = 4e-41 Identities = 477/720 (66%), Gaps = 8/720 (1%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTG-TCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||||| || |||||||| ||| | || | ||| || || || || |||||||| || Sbjct 10143275 TCGAATTCCTCTCCCCA-GCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGA 10143217 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| ||| ||| | | || |||||||| |||||||| || | ||| ||||| | || Sbjct 10143216 CCAATCTTGATCTTTTTCGACACGTTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAA 10143157 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 | || | | | | ||| || ||| || |||||| |||| | | ||| | | Sbjct 10143156 CAAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCGAA 10143097 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 || || | |||||| || |||||||| ||||| | |||| || || ||||| ||||| Sbjct 10143096 GATGTCGGCATGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGCTTGTTGCCTCC 10143037 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||| | ||| | ||| ||||| || || || | | |||||| || | |||||||| Sbjct 10143036 TTGATCAACGTAACGAGCAGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTGGA 10142977 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG--CTAATTGATAGA 72300 || || ||||| |||| || ||| | ||||| || ||| | ||||| || Sbjct 10142976 TGTTCCGTTGGTTCCGGCAATCACTGAACCAGTTGCACGGATCTTGTGCACATTGA--GA 10142919 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || ||||| || || | || ||||| | ||||| | || || || || ||||| || Sbjct 10142918 CCGATTCCTCCGGCACTCTTTGAGATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTCCG 10142859 Query 72361 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 || || || |||| || || |||| || |||||| || |||| | || Sbjct 10142858 AGAATCGAGTCCTCGCTCATCGTCAACAAGAAG-CATGAAGACATCTGTGGACGGCATGT 10142800 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 ||| | || || | || || ||||| || || | | || |||| | ||||| Sbjct 10142799 TCCAGAGTTGAAAAGAGTTGGCGAAGCATGTGTCATGTACCGCTCCGACATCAAGTTGTA 10142740 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 ||||||||| || | | || || | || ||||| | ||||||||||| ||||| Sbjct 10142739 CGTCTCAATCGCCGCGGCAATGTCGTTTCCGTGGATTCCAATGGCGACACGCATCAACAT 10142680 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 ||||| ||||| || |||| | || || || || | | ||| || || | || Sbjct 10142679 CTGCTGTGGTCTCTCGACGACTTCCTTGTTGATCTTGAGAAGGTAAGAACGCTCGAGCGT 10142620 Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || ||||| ||| |||| || | |||| ||||| | || | || ||||| || Sbjct 10142619 CTTGAATCCAAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACGATGGCGGAGTTGAGCTT 10142560 Score = 132 bits (146), Expect = 6e-26 Identities = 326/494 (66%), Gaps = 3/494 (1%) Strand=Plus/Minus Query 70790 CCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGC 70849 |||| || | || ||||||| || | | || | || ||||| | |||||||| | Sbjct 10144708 CCTTATCGACAGTGAACTGAACGGCATTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 10144649 Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAG 70909 | || || || || |||||||||| || ||||| || | || ||||| | Sbjct 10144648 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGCGGCGTAGCTTG 10144589 Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969 | | ||| ||||| || || | ||| || |||||||||||| ||||| | || |||| Sbjct 10144588 GCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCCACGATCGGCAG 10144529 Query 70970 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 71029 |||| | || ||| ||| |||| || ||||| | ||| |||| | ||| || | Sbjct 10144528 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAGTTCCTTGATGT 10144469 Query 71030 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 | ||||||| || |||| || ||||||||| | || || | | ||| || | Sbjct 10144468 CGTCTGGAATTCCTGGAATATTTTGGATGGATCCATTGTTGGCGATGAGACGATTCTTCA 10144409 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | || || ||| ||| |||||| | | | | || | || ||||| || | || Sbjct 10144408 TGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGTGTGGATTGACGATTT 10144349 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 | || || || || | || | ||||| ||| || ||| || || || || | || | Sbjct 10144348 GGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTAGAAGTGTATGGCTCAATCGATT 10144289 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 | || ||||| | || |||||||| || ||||| ||||| || |||| | ||||| | Sbjct 10144288 CGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATGAGGAGACTGT 10144229 Query 71267 TTCTAAGACCATGT 71280 | | || ||| ||| Sbjct 10144228 TGCGAACACCGTGT 10144215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671111943359240