Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 132 7e-26 >seq3 Length=15630833 Score = 132 bits (146), Expect = 7e-26 Identities = 224/318 (70%), Gaps = 10/318 (3%) Strand=Plus/Minus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||||||||||||| || |||||| | |||||||| |||||||| | || || Sbjct 12048175 CTTCTACGGATTCCAAATCGCCATCGAGAACATACACTCGGAGATGTACTCGAAGCTCAT 12048116 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATG---CTCTTTAACGCAATCGACAC 125350 || | ||| || ||||| | || | | | |||| || || ||||| ||| | Sbjct 12048115 CGAGACGTATATCCGCGACGAG-AAGG--AGCGCATGAAGCTGTTCAACGCCATCTTCGA 12048059 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | | | || |||||||| | |||| | |||| ||||| ||| |||| | Sbjct 12048058 GTTCGAATTCATCAAGAAAAAGGCCGACTGGGCGCTTCGTTGGATTTCCGACACCAAGGC 12047999 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTA 125469 |||| |||||| | || | || ||||| ||||| |||||||||||||| ||| | Sbjct 12047998 ATCGTTCGCCGAGCGGCTCATCGCGTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGCTC 12047939 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 ||| ||| | || || ||||||||||||||||| || ||||| ||| |||| || | Sbjct 12047938 GTTC-GCGTCGATTTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGATTGACCCATTCCA 12047880 Query 125530 ACGAGTTTATATCTCGAG 125547 ||||| | ||||||||| Sbjct 12047879 ACGAGCT--TATCTCGAG 12047864 Score = 114 bits (126), Expect = 2e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || || || ||||| || |||||| | || || ||| |||||| || ||||||||| | Sbjct 12047135 ATCGAGCAGGAGTTCCTCACCGAAGCGCTGCCCGTCGACATGATCGGAATGAACTGCCGG 12047076 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT--GATTGGCC 125775 || |||| ||||||| ||||| || || |||| ||| || | ||| | ||| || Sbjct 12047075 CTGATGTCGCAGTACATCGAGTTCGTTGCCGATCATCTGCTCCAGGAGCTCGGAT--GCG 12047018 Query 125776 GCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835 ||| | ||||||| ||||||||| || || |||||| | ||| || | || || | Sbjct 12047017 ATAAGCTGTACAACGTCAAGAATCCATTCGACTTCATGGAGAACATCTCGATCGATGGAA 12046958 Query 125836 AGACCAACTTTTTCGAGAA 125854 |||||||||| |||||||| Sbjct 12046957 AGACCAACTTCTTCGAGAA 12046939 Score = 104 bits (114), Expect = 3e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCAC 96864 ||| ||||| | ||| ||| || | |||||||| | | ||||| || || | | Sbjct 10142964 AACCAACGGAACATCCAATGGACTCATACCAATGCTTCGTGTCTACAACAACACTG-CTC 10143022 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | |||||| || || ||||| || || ||||| || | ||| |||||||||| || | Sbjct 10143023 GTTACGTTGATCAAGGAGGCAACAAGCGACCAGGAGCATTCGCCATCTACTTGGAGCCAT 10143082 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| || ||| | || || ||| | | | || || ||| | || ||||||| || Sbjct 10143083 GGCATGCCGACATCTTCGAGTTTGTTGCTCTTCGAAAGAACACCGGACCAGAAGAGGAAC 10143142 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC 97040 | || | |||||||| | || ||||||||||||||| | |||||||| || ||| Sbjct 10143143 GTGCTCGTGACTTGTTCTTGGCTCTCTGGGTGCCAGATCTCTTCATGAAACGTGTC 10143198 Score = 96.9 bits (106), Expect = 5e-15 Identities = 181/261 (69%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 97985 CAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGAA-TCTACA 98043 ||||||||| ||||| ||||| ||| | || || || || | | ||| | ||| Sbjct 10144428 CAACAATGGATCCATCCAAAATATTCCAGGAATTCCAGACGACAT-CAAGGAACTTTACC 10144486 Query 98044 AGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCT 98103 |||||||||||||| | ||| | | ||||| ||||||||||| | || | | Sbjct 10144487 TCACTGTCTGGGAGATCTCACAGAAGGAGATTATCGAGATGGCTGCCGATCGTGGAGCAT 10144546 Query 98104 ACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG-TATG 98162 ||| || || |||||| |||| | || | ||| |||| | |||| | || || Sbjct 10144547 TCATCGATCAATCCCAATCGCTCAACATCCACATGGCCAAGCCAAGCTAC-GCCGCCATC 10144605 Query 98163 ACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGA 98222 || || || ||||| |||| |||||| ||||| |||||||| || |||||||| || | Sbjct 10144606 ACCTCAATGCACTTCTACGGATGGAAGAAGGGACTCAAGACTGGAATGTACTACTTGCGT 10144665 Query 98223 ACAAAGTCGGCCACCAATGCC 98243 || ||| | || ||||||| Sbjct 10144666 ACCAAGCCAGCTGTCAATGCC 10144686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741029103733240