Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3 105 5e-18 >seq3 Length=15630833 Score = 105 bits (116), Expect = 5e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || ||||| || || || |||||||| ||| ||| | | | || || Sbjct 1643885 AACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 1643944 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | ||||| | ||| ||||| |||||||||||| ||||| Sbjct 1643945 GAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTG 1644004 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||||||| || || || | |||||| || || Sbjct 1644005 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTT 1644064 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAA 15376 ||| |||||||| || || || |||||||| ||||||| || Sbjct 1644065 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAAATCAA 1644107 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || ||||| ||||||||||| ||| |||| | ||||| ||||| Sbjct 4185735 ATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGACAGAGTTCTACCATCTTCCAATTG 4185676 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | || | | ||||||||| ||| |||||||| || || || || Sbjct 4185675 CTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTT 4185616 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || |||| ||||| || | ||| || || | || ||||| || || || Sbjct 4185615 GGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCTTTCCAGT 4185556 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || || || ||||| Sbjct 4185555 CAGAGTCTTGACGAAGATCTGCAT 4185532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362164858722309