Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_004902.1 Length=44373 Score E Sequences producing significant alignments: (Bits) Value seq1577 86.0 2e-12 >seq1577 Length=16492 Score = 86.0 bits (94), Expect = 2e-12 Identities = 167/245 (68%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 6184 TCGATCAGCTGCGTCTTGCGATGTTGCAGGCAAGCCTGGCCGAGTATCCGGCTAGCGGCA 6243 ||||| || ||||| || || | ||||| ||| || || ||||||||| ||| | Sbjct 2766 TCGATATTCTCCGTCTGGCAATTCTACAGGCCTCCCTCGCAGAATATCCGGCTGACGGTA 2825 Query 6244 TTGTGATCAACCCGATTGACTGGGCGGCGATTGAGCTCGCCAAGGATGCGAACAACCAGT 6303 | ||| | ||||| | |||||||| | || || || ||||||||| | ||| | Sbjct 2826 TCGTGCTTAACCCTACCGACTGGGCAGATATCGAACTGACCAAGGATGGTGAGGACCGCT 2885 Query 6304 ACCTGATTGGCAATGCCCGTGGCACCCTGACG--CCGACCCTGTGGGGTCTGCCGGTGGT 6361 || | | | ||||| | || | || || ||| || ||||| | ||||| | Sbjct 2886 ACATCTTCGCCAATGT--GATCCAGCTTGCCGGTCCGCAGCTCTGGGGACGTCCGGTCAT 2943 Query 6362 TGCCACCCAGGCTATGGCTCCGGGCGAATTCCTGGTTGGTGCATTCGACTTGGCTGCCCA 6421 || || ||||| |||| || || |||||||| |||||||||||| ||||||| | Sbjct 2944 CGCTACTCAGGCGATGGATCTGGATGAATTCCTTGTTGGTGCATTCCGGATGGCTGCAAA 3003 Query 6422 GATCT 6426 ||||| Sbjct 3004 GATCT 3008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141866526312230