Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq1477 89.7 6e-13 >seq1477 Length=5094 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6479 AGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGA 6538 |||||||| | ||| |||||| || | || || ||||| | ||||||||||| || Sbjct 4478 AGAGCTTCCGCGAAAGCAACTGCCTTACCAGCAATCACATGCATCAGCGGGCCGCCCTGC 4537 Query 6539 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6598 | || ||||||| ||| ||||| | ||||| || | ||||| |||||| || || || Sbjct 4538 AGGCCAGGGAAGACAGCCGAATTGAACTTCTTCGCCAGATCAGGATCGTTGGTGAGGATC 4597 Query 6599 AGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGT 6642 | || || || || ||||||| | || ||||| || || || Sbjct 4598 ATACCGCCGCGTGGACCGCGCAGCGACTTGTGAGTCGTCGTGGT 4641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555340645312040