Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq1878 150 6e-32 seq1577 123 9e-24 >seq1878 Length=10347 Score = 150 bits (166), Expect = 6e-32 Identities = 522/797 (65%), Gaps = 18/797 (2%) Strand=Plus/Plus Query 16817 ACACGTCGAACGGCAATATCACGGGCTATCGCGTCGACTATGCGATCGACTTGTCGGTCG 16876 |||| ||||| || ||||| ||||| ||||| || || |||||| | | | Sbjct 9384 ACACCTCGAATGGAGATATCGGTGGCTACCGCGTTGAGTACCAGATCGAAGTAAGTGCGG 9443 Query 16877 ACGGCGG-GTCGTATGCGCAGGTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCGCTC 16935 |||| || ||| || || | ||| || |||| || ||||| ||||| ||| | | Sbjct 9444 ACGGTGGTGTC-TACCAGCTCGCGCTTGCGAGTGCATTTGACGGGAAGACAACGCAACGC 9502 Query 16936 TATGAGCGCTCGCATCGGATCGAGCTGCCGCGCGCAAAAAATGGTTGGTTGATCCGCGTG 16995 ||| ||| |||||||| || || || ||| ||| ||| |||| | | || || Sbjct 9503 TATTCGCGGTCGCATCGAATTGACCTCCCGGCCGCGCGGTCTGGCTGGTCGGTGCGAGTT 9562 Query 16996 CGCCGCATCACGCCGAACGCGCACA-CGGCGACGATCGCCGACGCGATCAACGTCGAGGC 17054 || || || ||| ||||||| | | | | | | || | || | | | || || | Sbjct 9563 CGGCGAATTACGGCGAACGCCAATAGCAGTGTC-ATTTCTGATCGAACCTATGTAGATGG 9621 Query 17055 GATTACCGAGATCATCGATCGGAAGCTCCGCTATCCGATGACGGCGCTTGTCGGTATGAC 17114 |||||| ||| | || || ||||| | || |||||| | || || ||||| || | Sbjct 9622 GATTACGGAGGTAATAGACGCCAAGCTTAGGTACCCGATGTCTGCTCTGGTCGGCATCAG 9681 Query 17115 GTTCGACGCACGTTCGTTCTCGAGCG-TGCCAGTGCGTTCGTATCACGTGCGAGGGATGA 17173 | | || || |||| | | | | || | ||| || ||| || || ||||| || Sbjct 9682 GATTGATGCCTCCCAGTTC-CAATCAATACCCGCGCGATCCTATGAC-TGGAAGGGACGA 9739 Query 17174 -TCTTCCGAGTCCCGACAAACTACGACCCGGA--GACGCGTACGTACTCGGGTACATGGG 17230 || |||| |||||| | ||||| ||| ||| | |||| | ||| |||| || |||| Sbjct 9740 ATCATCCGCGTCCCGTCGAACTATGACGAGGATCGTCGCGCA--TACGCGGGAACCTGGG 9797 Query 17231 ACGGTACGTTCAAGGCAGCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTACTTC 17290 |||| || |||||| || ||||| |||| || |||||| | | ||| | ||| | Sbjct 9798 ACGGAACTTTCAAGCTTGCGTGGACTGACAACCCTGCGTGGATTTTCTATGACCTCGTGA 9857 Query 17291 TCGACAAGCTCAACGGATTGGGTGACCGTGTCGATGCTTCGATGG--TCGATAAGTGGGC 17348 | | | | | || ||||||| || | | || || | | | |||||||||| Sbjct 9858 CCAATGATCGGTATGGCCTGGGTGAGCGCAT--ACCCTCCGGTTGGTTGGATAAGTGGGG 9915 Query 17349 GCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCAAGGA 17408 | |||| || || || |||||||| ||||| ||| |||| || ||||| | || Sbjct 9916 GTTGTATCAGATAGCCCGGTACTGCGATGAACTAGTGCCCGATGGATTTGGCGGGCAAGA 9975 Query 17409 GCCGTGCTTCACCTGCAACTGCGTGCTTCAGACGCGCGCGGACGCATTCAAGGTGGTACA 17468 ||| ||||||||||||||||| | ||||| ||||||||| | ||| | || Sbjct 9976 GCCACGCTTCACCTGCAACTGCTATTTGCAGACAGCCGCGGACGCGTATCGGGTTTTGCA 10035 Query 17469 GGATCTCGCGAGCGTCTTTCGCGGCATTTCGTACTGGGGCGCCGGGTCGGTGGTCG-CGT 17527 ||| || ||| || || || || || ||||||||| ||| || | | ||| Sbjct 10036 GGACCTGGCGTCGGTGTTCCGGGGAATGACGTACTGGGCGAATTCGTCAGTCTTTGCCGT 10095 Query 17528 CGGCCGATATGCCGTCCGATCCGGTCTACCTGTACACGGCCGCGAATGTCGTCGGTGGTT 17587 | || |||||||| |||||| ||||| | |||| | || || || ||| || Sbjct 10096 C-GCAGATATGCCCGGCGATCCCGTCTATACCTTCACGTCGGCCAACGTGATCGACGGCC 10154 Query 17588 CATTCAAGTACGTCGGC 17604 ||| || ||||||||| Sbjct 10155 GATTTAATTACGTCGGC 10171 >seq1577 Length=16492 Score = 123 bits (136), Expect = 9e-24 Identities = 261/387 (67%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 5079 AATGCGACGCCGATCGACAAGATCCGTCTGGCACTGTTGCAAGCAGTTCTCGCCGAATTT 5138 ||| | ||| |||||| | ||||||||||| | | || || ||||| |||| | Sbjct 2753 AATCCAACGAAGATCGATATTCTCCGTCTGGCAATTCTACAGGCCTCCCTCGCAGAATAT 2812 Query 5139 CCGGCGACCGGGATCGTCCTGAATCCGATCGACTGGGCGTCGATCGAGTTGACGAAGGAC 5198 ||||| ||| ||||| || || || | ||||||||| ||||| |||| ||||| Sbjct 2813 CCGGCTGACGGTATCGTGCTTAACCCTACCGACTGGGCAGATATCGAACTGACCAAGGAT 2872 Query 5199 AGCCAGGGGCGATACATCGTCGGCAATCCGGTCAACGGTACGACGCCGCGCCTGTGGAAT 5258 | ||| || |||||| ||| |||| | || | | | |||| || ||| Sbjct 2873 GGTGAGGACCGCTACATCTTCGCCAATGTGATCCAGCTTGCCGGTCCGCAGCTCTGGGGA 2932 Query 5259 CTGCCGGTCGTTGAAACGCAGGCGATGACTGCGAACGAATTCCTCGTCGGCGCCTTCTCG 5318 | |||||| | | || ||||||||| | | | |||||||| || || || ||| | Sbjct 2933 CGTCCGGTCATCGCTACTCAGGCGATGGATCTGGATGAATTCCTTGTTGGTGCATTCCGG 2992 Query 5319 ATGGCGGCTCAGATCTTCGACCGCATGGAGATCGAGGTTCTTCTGTCGACCG-AGAACGT 5377 ||||| || |||||| ||||| ||||| | || ||||| | ||| | | ||| || Sbjct 2993 ATGGCTGCAAAGATCTGGGACCGAATGGATACTGAAGTTCTAATCTCGTCGGAAGATCG- 3051 Query 5378 CGACGACTTCGAAAAGAACATGGTGTCGATCCGTGCGGAGGAACGCCTCGCGCTTGCCGT 5437 |||| |||||| || |||||| | | | ||||| || | || ||||| || || || Sbjct 3052 CGACAACTTCGTCAAAAACATGCTCACCGTTCGTGCAGAAAAGCGTCTCGCCCTCGCAGT 3111 Query 5438 CTATCGTCCGGAATCGTTTGTGACCGG 5464 | | || || | | |||||||||| Sbjct 3112 CAAGCGCCCTGGTGCTCTTGTGACCGG 3138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175439630948926