Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 138 3e-27 >seq3 Length=15630833 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || || || || || || || || ||||||||||| || Sbjct 4185744 AAGGACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGACAGAGTTCTACCATC 4185685 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | ||| || || || || || || || ||||| || || || |||||||| ||||| Sbjct 4185684 TTCCAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTATC 4185625 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || || ||||| | ||| || || ||| ||||| || || || || Sbjct 4185624 CTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGT 4185565 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| ||||| || || || || || ||||||||| Sbjct 4185564 CTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151350469803292