Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq2112 150 7e-32 seq365 95.1 5e-15 >seq2112 Length=10038 Score = 150 bits (166), Expect = 7e-32 Identities = 213/299 (71%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 11207 TCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCT 11266 |||||| ||| | ||| ||| |||||||| ||||| | ||| ||||||||| Sbjct 9044 TCGGTGGAGTACTTCTCCACGCCATCCTGGCCGGTGTACTTGTCGTAGCGCAGGCTGCCT 9103 Query 11267 TCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCA 11326 |||| ||||||| | |||||| |||||||| | | ||||| ||| | ||| ||| Sbjct 9104 TCGACGTAGACCGAGCTGCCCTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGCTTGCCG 9163 Query 11327 AAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTC 11386 |||| ||| || |||||||| ||||| || |||||||| | ||| | |||||| || Sbjct 9164 AAGAACACCACGCGGTGCCATTCGGTACGTTCCTGCTGGTTGCC---ATCCTTGTCCTTG 9220 Query 11387 CAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGATCTT 11446 | | | | |||||||| |||| | ||||| |||| | |||| | |||| | | Sbjct 9221 CGGACGCTGGTGGTGGCCAGGCTGATGCGGGTGATCGCCATGCCGCTCTGGGTGTACTTC 9280 Query 11447 GCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCAT 11505 |||| || || | ||| || | |||||||||||| || ||||| | ||||| ||||| Sbjct 9281 ACGTCCGGGTCGTTGCCGAGGTTGCCGACCAGGATGACTTTGTTGATGCCGCGCGCCAT 9339 >seq365 Length=3923 Score = 95.1 bits (104), Expect = 5e-15 Identities = 137/192 (71%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 11207 TCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCT 11266 |||||||||||| |||| | ||||| |||| |||||||||||||||| | || |||| Sbjct 972 TCGGTGCTGTAGCGGTCGTTGCCGTTCTGGTCCTGCCACTTGCGGGTCTGCAGTGCGCCT 1031 Query 11267 TCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAG----CCG 11322 ||||| || |||| || |||||| ||| || ||| | || | | ||| || || Sbjct 1032 TCGATATAAACCTTGGCACCCTTTTTCAGATACTGCTCGGCAACCTTGGCAAGATTTTCG 1091 Query 11323 GCCAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTC 11382 ||| | || || | |||||| ||||| || |||| | | ||||||||| ||| Sbjct 1092 TTGAAA-ATGACAACGCTGTGCCATTCGGTACGATCCTTGCGTTCGCCGGTCTGACGGTC 1150 Query 11383 TTTCCAGCTTTC 11394 ||||||||| Sbjct 1151 GCGCCAGCTTTC 1162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208490944018084