Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 219 7e-53 seq5 197 2e-46 seq3056 176 7e-40 seq1 176 7e-40 >seq4 Length=19682253 Score = 219 bits (242), Expect = 7e-53 Identities = 192/239 (80%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||||| || ||||||||||||||||||||||||||||| Sbjct 9477472 GCCAAGCGCCATCGCAAAGTCCTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTATT 9477531 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||||||||||||||||||||| |||||||| | |||| || || | Sbjct 9477532 CGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAAACC 9477591 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | |||||| ||| ||| |||| ||||||| || ||| |||| Sbjct 9477592 CGTGGAGTCCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTACTGCGAG 9477651 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | ||||| |||||| ||||||| ||||||| || ||||| || ||||| Sbjct 9477652 CACGCCAAAAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGG 9477710 Score = 215 bits (238), Expect = 8e-52 Identities = 191/239 (80%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||||| || ||||||||||||||||||||||||||||| Sbjct 8772005 GCCAAGCGCCATCGCAAAGTCCTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTATT 8772064 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||||||||||||||||||||| |||||||| | |||| || || | Sbjct 8772065 CGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAAACC 8772124 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | |||||| ||| ||| |||| ||||||| || ||| |||| Sbjct 8772125 CGTGGAGTCCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTACTGCGAG 8772184 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| |||||| ||||||| ||||||| || ||||| || ||||| Sbjct 8772185 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGG 8772243 Score = 214 bits (236), Expect = 3e-51 Identities = 193/240 (80%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||||||||||||||||||||| Sbjct 8906989 GCCAAGCGCCATCGCAAGGTC-CTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTAT 8906931 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| |||||||||||||||||||||||| |||||||| | |||| || || | Sbjct 8906930 TCGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAAAC 8906871 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | |||||| ||| ||| |||| ||||||| || ||| ||| Sbjct 8906870 CCGTGGAGTCCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTACTGCGA 8906811 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| ||||||| || ||||| || ||||| Sbjct 8906810 GCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGG 8906751 >seq5 Length=22087214 Score = 197 bits (218), Expect = 2e-46 Identities = 187/239 (78%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || ||||||||||||||||| |||||||| || Sbjct 1558256 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATT 1558197 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||||||| |||||||| | |||| || |||| | Sbjct 1558196 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACT 1558137 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 1558136 CGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAG 1558077 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| |||||| ||||||| |||||||||| ||||| |||||||| Sbjct 1558076 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGG 1558018 Score = 197 bits (218), Expect = 2e-46 Identities = 187/239 (78%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || ||||||||||||||||| ||||||||||| Sbjct 9739014 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCTATT 9738955 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||||||| |||||||| | |||| || |||| | Sbjct 9738954 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACT 9738895 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 9738894 CGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAG 9738835 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| |||||||||| ||||| |||||||| Sbjct 9738834 CACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGG 9738776 Score = 197 bits (218), Expect = 2e-46 Identities = 187/239 (78%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || ||||||||||||||||| ||||||||||| Sbjct 9788129 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCTATT 9788188 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||||||| |||||||| | |||| || |||| | Sbjct 9788189 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACT 9788248 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 9788249 CGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAG 9788308 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| |||||||||| ||||| |||||||| Sbjct 9788309 CACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGG 9788367 Score = 188 bits (208), Expect = 1e-43 Identities = 208/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||| || || ||||||||||||||||| |||||||| || Sbjct 1549850 GCCAAGCGCCATCGCAAAGTTCTCCGTGACAACATCCAAGGAATCACGAAGCCAGCCATT 1549909 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||||||| |||||||| | |||| || |||| | Sbjct 1549910 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACT 1549969 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 1549970 CGTGGAGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAG 1550029 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| |||||||||| ||||| |||||||| Sbjct 1550030 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGA 1550089 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 | | | || || || ||| | |||| || | ||| Sbjct 1550090 AGAACCCTGTACGGATTCGGAGGATAATTTTATTATC 1550126 Score = 141 bits (156), Expect = 1e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 16482 AGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCT 16541 |||||||||| || ||||| |||||||||||||||||||||||| |||| ||| | ||| Sbjct 14788850 AGCCAGCTATTCGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCCGGACTCATCT 14788909 Query 16542 ATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCC 16601 | || || | ||||| ||| ||||| | |||||| ||| || |||| ||| || || Sbjct 14788910 ACGAGGAAACTCGTGGAGTTCTGAAGGTGTTCCTCGAGAATGTCATCCGTGACGCCGTCA 14788969 Query 16602 ACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGA 16661 ||| |||||||| || | ||||| ||||| | ||||| ||||||| || |||| Sbjct 14788970 CCTACTGTGAGCACGCCAAGAGAAAGACCGTCACTGCTATGGACGTCGTCTACGCTTTGA 14789029 Query 16662 AACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| || || | | |||| || ||||| Sbjct 14789030 AACGCCAGGGAAGAACTCTTTACGGATTTGG 14789060 >seq3056 Length=3815 Score = 176 bits (194), Expect = 7e-40 Identities = 205/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| |||||||||||||| |||||||||||||| ||| Sbjct 3293 GCCAAGCGCCATCGCAAAGTTCTTCGTGATAACATCCAAGGTATCACCAAGCCAGCCATC 3352 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||| ||| | || ||| | |||| || || | Sbjct 3353 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAACGTATTTCCGGACTCATCTACGAGGAAACC 3412 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| |||||| || ||| |||| Sbjct 3413 CGTGGAGTTCTCAAGGTTTTCCTTGAGAACGTGATCCGTGATGCCGTCACCTACTGCGAG 3472 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| ||||||| || ||||| || ||||| Sbjct 3473 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCCTTGAAGCGCCAAGGA 3532 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 | | | || || || ||| | |||| || | ||| Sbjct 3533 AGAACCCTCTACGGATTCGGAGGATAATTTTATTATC 3569 >seq1 Length=16658584 Score = 176 bits (194), Expect = 7e-40 Identities = 205/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| |||||||||||||| |||||||||||||| ||| Sbjct 6020543 GCCAAGCGCCATCGCAAAGTTCTTCGTGATAACATCCAAGGTATCACCAAGCCAGCCATC 6020602 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||| ||| | || ||| | |||| || || | Sbjct 6020603 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAACGTATTTCCGGACTCATCTACGAGGAAACC 6020662 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| |||||| || ||| |||| Sbjct 6020663 CGTGGAGTTCTCAAGGTTTTCCTTGAGAACGTGATCCGTGATGCCGTCACCTACTGCGAG 6020722 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| ||||||| || ||||| || ||||| Sbjct 6020723 CACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCCTTGAAGCGCCAAGGA 6020782 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 | | | || || || ||| | |||| || | ||| Sbjct 6020783 AGAACCCTCTACGGATTCGGAGGATAATTTTATTATC 6020819 Score = 141 bits (156), Expect = 1e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||||||||||||||||||||||||||| ||||| || | | || Sbjct 7051758 CTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTATCCGACGTCTCGCCAGAAGAGGA 7051817 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||||||| | || | | | || | || | || | ||| | | |||||| Sbjct 7051818 GGAGTCAAGCGTATTTCCGAACCCATTTACAAGGAAACCCGCGGAGTTCTCAGAATCTTC 7051877 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| |||||| || ||| |||||||| || | ||||||||| Sbjct 7051878 CTTGAGAACGTGATCCGTGATGCCGTCACCTACTGTGAGCACGCCAAGAGAAAGACTGTC 7051937 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||||| |||||||||| ||||| || ||||| Sbjct 7051938 ACTGCCATGGACGTCGTCTATGCCTTGAAGCGCCAAGG 7051975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072229416557