Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 181 1e-40 >seq3 Length=15630833 Score = 181 bits (200), Expect = 1e-40 Identities = 477/722 (66%), Gaps = 12/722 (2%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 ||||| || |||||||| | || | ||| || || || || |||||||||||| Sbjct 10143275 TCGAATTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 10143216 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || ||| || | | || |||||||| |||||||| || | ||| ||||| | || Sbjct 10143215 CAATCTTGATCTTTTTCGACACGTTTCATGAAGAGATCTGGCACCCAGAGAGCCAAGAAC 10143156 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 | || | | | ||||||| | | || || |||||| |||| | | ||| | Sbjct 10143155 AAGTCACGAGCAC---GTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGAGCAACAAACTCG 10143099 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | || || | |||||| || |||||||| ||||| | |||| || || ||||| ||| Sbjct 10143098 AAGATGTCGGCATGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGTCGCTTGTTGCCT 10143039 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 || ||||| | ||| | ||| ||||| || || || | | |||||| || | || || Sbjct 10143038 CCTTGATCAACGTAACGAGCAGTGTTGTTGTAGACACGAAGCATTGGTATGAGTCCATTG 10142979 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA--CTAATTGATA 63492 ||| | || ||||| |||| || ||| | ||||| || || | ||||| Sbjct 10142978 GATGTTCCGTTGGTTCCGGCAATCACTGAACCAGTTGCACGGATCTTGTGCACATTGA-- 10142921 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 |||| ||||| || || | || ||||| | ||||| | || || ||||| ||||| | Sbjct 10142920 GACCGATTCCTCCGGCACTCTTTGAGATCAGAGCGCACTGCTTCAAAGTGTCGTAGATTC 10142861 Query 63553 CCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 | || || ||| |||| || || |||| || |||||| || |||| | Sbjct 10142860 CGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAG-CATGAAGACATCTGTGGACGGCAT 10142802 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| | || || | || || ||||| || || | | || || | | ||| Sbjct 10142801 GTTCCAGAGTTGAAAAGAGTTGGCGAAGCATGTGTCATGTACCGCTCCGACATCAAGTTG 10142742 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 ||||||||||| || | | | || || | || ||||| | ||||||||||| ||| Sbjct 10142741 TACGTCTCAATCGCCGCGGCAATGTCGTTTCCGTGGATTCCAATGGCGACACGCATCAAC 10142682 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 || ||||| ||||| || |||| | ||||| || || | | ||| || || | Sbjct 10142681 ATCTGCTGTGGTCTCTCGACGACTTCCTTGTTGATCTTGAGAAGGTAAGAACGCTCGAGC 10142622 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63851 || || || ||||| ||| |||| || | |||| ||||| | || | |||||||| Sbjct 10142621 GTCTTGAATCCAAAGTAGGTGTAAGAGTAATCTCTGTCGTAGACGATGGCGGAGTTGAGC 10142562 Query 63852 TT 63853 || Sbjct 10142561 TT 10142560 Score = 138 bits (152), Expect = 1e-27 Identities = 326/492 (66%), Gaps = 3/492 (1%) Strand=Plus/Minus Query 61984 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62043 |||| || | ||||| |||| || | | || || || ||||| | |||||||||| Sbjct 10144708 CCTTATCGACAGTGAACTGAACGGCATTGACAGCTGGCTTGGTACGCAAGTAGTACATTC 10144649 Query 62044 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62103 | || || || || |||||||||| || ||||| || | || || || | Sbjct 10144648 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGCGGCGTAGCTTG 10144589 Query 62104 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62163 | | || || ||||| || | ||||| |||||||||||| ||||| | || |||| Sbjct 10144588 GCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCCACGATCGGCAG 10144529 Query 62164 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62223 |||| | || ||| ||| |||| || ||||| | ||| |||| | ||| || | Sbjct 10144528 CCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAGTTCCTTGATGT 10144469 Query 62224 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62280 | ||||||| || |||| || ||||||||| | || || | | |||||| | Sbjct 10144468 CGTCTGGAATTCCTGGAATATTTTGGATGGATCCATTGTTGGCGATGAGACGATTCTTCA 10144409 Query 62281 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62340 | ||||| ||| ||| |||||| | | | | || | || ||||| || | || Sbjct 10144408 TGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGTGTGGATTGACGATTT 10144349 Query 62341 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62400 | || || || || | || | |||| ||| || ||| || || || || | ||| | Sbjct 10144348 GGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTAGAAGTGTATGGCTCAATCGATT 10144289 Query 62401 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62460 | || ||||| | || |||||||| || ||||| ||||| || |||| | | ||| | Sbjct 10144288 CGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATGAGGAGACTGT 10144229 Query 62461 TTCTAAGACCGT 62472 | | || ||||| Sbjct 10144228 TGCGAACACCGT 10144217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622921900556840