Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 145 2e-29 seq1 109 1e-18 >seq3 Length=15630833 Score = 145 bits (160), Expect = 2e-29 Identities = 390/587 (66%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||||| |||||||| || ||||| ||||| | || ||| || ||| Sbjct 10142671 CCACAGCAGATGTTGATGCGTGTCGCCATTGGAATCCACGGAAACGACATTGCCGCGGCG 10142730 Query 363514 ATTGAAACATATAAGCTTCTAAGT--GCTCGTGTAT-TCACGCACGCCACGCCAACAATG 363570 ||||| || || || ||| | || | || ||| | || || || ||||||| | Sbjct 10142731 ATTGAGACGTACAA-CTTG-ATGTCGGAGCG-GTACATGACACATGCTTCGCCAACTCTT 10142787 Query 363571 TACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGAC 363630 | ||| ||||||| | ||||||||||||||| ||||| | | | |||| || Sbjct 10142788 TTCAACTCTGGAACATGCCGTCCACAGATGTCTTCATGCTTCTTGTTGACGATGAGCGAG 10142847 Query 363631 GATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCA 363690 || || || || |||| ||||| | ||| | || ||||| || || |||| ||| Sbjct 10142848 GACTCGATTCTCGGAATCTACGACACTTTGAAGCAGTGCGCTCTGATCTCAAAGAGTGCC 10142907 Query 363691 GGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--GAACAGTTACATTCGCGGCA 363748 || ||||| ||| | | ||||| | |||||| | |||| | || ||| | Sbjct 10142908 GGAGGAATCGGTCTCAATGTGCACAAGATCCGTGCAACTGGTTCAGTGA--TTGCCGGAA 10142965 Query 363749 CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGT 363808 | ||| || ||||| || | || ||||||||||| | |||| ||||| | | Sbjct 10142966 CCAACGGAACATCCAATGGACTCATACCAATGCTTCGTGTCTACAACAACACTGCTCGTT 10143025 Query 363809 ACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATC 363868 |||| || || || || ||||| ||| || || || || || | ||||| | Sbjct 10143026 ACGTTGATCAAGGAGGCAACAAGCGACCAGGAGCATTCGCCATCTACTTGGAGCCATGGC 10143085 Query 363869 ATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG---AAAAGAGGAATTGC 363925 ||||||| || || |||||| ||| || || || ||||| || | |||||||| | Sbjct 10143086 ATGCCGACATCTTCGAGTTTGTTGCTCTTCGAAAGAACACCGGACCAGAAGAGGAA---C 10143142 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 |||| ||||| |||||| || || ||||| | || | || ||||| || || || Sbjct 10143143 GTGCTCGTGACTTGTTCTTGGCTCTCTGGGTGCCAGATCTCTTCATGAAACGTGTCGAAA 10143202 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTT 364032 || | | ||||||| | | |||||| ||| || ||||| ||| Sbjct 10143203 AAGATCAAGATTGGTCGTTGATGTGCCCATGCGAGTGCCCAGGACTT 10143249 Score = 111 bits (122), Expect = 4e-19 Identities = 287/435 (66%), Gaps = 2/435 (0%) Strand=Plus/Plus Query 364723 CATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782 || ||| ||||||| ||| | | || || ||||| || ||||| ||||| |||||| Sbjct 10144216 CACGGTGTTCGCAACAGTCTCCTCATGGCTCCAATGCCAACTGCTTCCACTGCTCAGATC 10144275 Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842 || ||||||||||| | | || || | || || | || || || || || || Sbjct 10144276 CTTGGAAACAACGAATCGATTGAGCCATACACTTCTAACATCTACTCTCGTCGTGTGCTC 10144335 Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902 ||||| || || | | || ||| || | | |||||||| || | || || Sbjct 10144336 TCCGGTGACTTCCAAATCGTCAATCCACACATGCTGAAGGATCTGGTTGAGAGAGGATTG 10144395 Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962 ||| || ||||||||| | |||||||| ||||| || | || || |||||| Sbjct 10144396 TGGTCCGATGACATGAAGAATCGTCTCATCGCCAACAATGGATCCATCCAAAATATTCCA 10144455 Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGAAC 365021 ||| ||||||| || | ||| ||||| || || ||||| || || || | | Sbjct 10144456 GGAATTCCAGACGACATCAAGGAACTTTACCTCACTGTCTGGGAGATCTCACAGAAGGA- 10144514 Query 365022 TCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGT 365081 | || || ||||| |||||||| || || || ||| ||| ||| ||| | ||| | Sbjct 10144515 GATTATCGAGATGGCTGCCGATCGTGGAGCATTCATCGATCAATCCCAATCGCTCAACAT 10144574 Query 365082 ATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATC 365141 |||| | |||||| || |||| | || || ||||| |||||||| ||||| Sbjct 10144575 CCACATGGCCAAGCCAAGCTACGCCGCCATCACCTCAATGCACTTCTACGGATGGAAGAA 10144634 Query 365142 CGGTCTTAAGACAGG 365156 || || ||||| || Sbjct 10144635 GGGACTCAAGACTGG 10144649 >seq1 Length=16658584 Score = 109 bits (120), Expect = 1e-18 Identities = 309/470 (66%), Gaps = 16/470 (3%) Strand=Plus/Plus Query 12826 GATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGTTTTT 12885 ||||| || || |||| ||||||||||| || ||||| ||||| ||||||||| ||| Sbjct 3815802 GATCCGAAAGTGAGAGCGTCCATGTCTTCCGTAGCTGTTCCATACACTTTTCCTGCTTTG 3815861 Query 12886 ACATATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAACGACCGGAATGCCCATT 12945 ||| |||||| ||||| ||||||||||| || | || |||||||| ||||| Sbjct 3815862 ACAAGATTTGCACATTGTGCTTCAGCCTCACATGGAGCCTCGACTACCGGAATCCCCATC 3815921 Query 12946 AGGGTTAGCATCTTTTTTACTTCTTCGCTATGTTCGCGAGTTGCGCGAACGCTTCTCTTT 13005 | |||| || ||| ||||||||| | || | || | ||| | || Sbjct 3815922 AATCCCAGCAACTGTTTGACTTCTTCGTTTTGCTGCTTTGTGACCTTAACCAGACGTCTT 3815981 Query 13006 TCTTGTTTTTCGACTTCAGTTGCATCGTCGGTTAATTTTAG-TTCGGATAGT-------- 13056 || || || |||| ||||||| || || ||||| |||| | | Sbjct 3815982 TCAAACTTCTCCGCTTCCTTTGCATC-TCCTTTCTCTTTAGCCTCGGTCAATGCCTTTTC 3816040 Query 13057 -GCTTGTGCCTGTCGTTCATTTCGTTTATCAAGCTCTTTCTTTTTCAAAACAGGTGGCTT 13115 |||| || ||||||| | || || || ||||| | |||| | ||||| || Sbjct 3816041 AGCTTCAGCACGTCGTTCTGTACGCTTTTCGAGCTCGCCACTCTTCATGTCTGGTGGTTT 3816100 Query 13116 TCCGTCAAAAACATAGACGGGTTTAATTCCTGCTTCAATTAATCGAATGGTTCGGTAAAA 13175 ||| || || |||||||| ||||| ||||| ||||| | |||||| ||||| || || Sbjct 3816101 TCCATCGAACACATAGACTGGTTTGATTCCATTATCAATCATTCGAATAGTTCGATAGAA 3816160 Query 13176 AATACCTGTTAAATGTGAAGTCACTTCACCTTC-GCAAGCTGCAAGTTGCCCCGATGGAC 13234 || || | | ||| || |||||| || || |||| | ||| ||| | Sbjct 3816161 CATTCCCATCAGATGACTTGTGGTTTCACCATCTTCACTCTGC-ATTTG---CGAACCAT 3816216 Query 13235 CTTGTCGAATAGCAATAAGACACTGATAAATTTGCATAGATGCATCAATC 13284 |||| ||||||||||| || |||| || | ||| || ||||| ||| Sbjct 3816217 CTTGACGAATAGCAATTAGGAACTGGTACAAGCACATTGAAGCATCGATC 3816266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303299344240718