Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq1878 141 3e-29 seq1976 105 2e-18 seq1911 82.4 2e-11 >seq1878 Length=10347 Score = 141 bits (156), Expect = 3e-29 Identities = 453/693 (65%), Gaps = 30/693 (4%) Strand=Plus/Minus Query 27477 GCCATCGATCACGTTCGCCGCCGTGTACACGTACACCGGATCTGACGGCATGTCCGCCGA 27536 ||| ||||||||||| |||| |||| | || || ||||| ||||| || || Sbjct 10153 GCCGTCGATCACGTTGGCCGACGTGAAGGTATAGACGGGATCGCCGGGCATATCTGCGAC 10094 Query 27537 TGCGACGACAGCTCCCGGCCCCCAGTAGGCGATGCCGCGGAACACGCTCGCGATGTCCTG 27596 || | ||| | | ||||||| | || || |||||||| ||| | |||||| Sbjct 10093 GGCAAAGACTGACGAATTCGCCCAGTACGTCATTCCCCGGAACACCGACGCCAGGTCCTG 10034 Query 27597 CAACACCTTGAACGCGTCGGCCGCCGACTGGATCACGCAGTTGCAGGCGAATCGCGGCTC 27656 ||| ||| ||||||| || || | ||| | ||||||||||| ||| || ||||| Sbjct 10033 CAAAACCCGATACGCGTCCGCGGCTGTCTGCAAATAGCAGTTGCAGGTGAAGCGTGGCTC 9974 Query 27657 GACGCCGCCTTTTCCGTCCGACACCATCACATCGCAGTAGCGCGCGATTTCGTACAGCCC 27716 ||||| ||| || | ||| | |||||||||| || || || | |||| ||| Sbjct 9973 TTGCCCGCCAAATCCATCGGGCACTAGTTCATCGCAGTACCGGGCTATCTGATACAACCC 9914 Query 27717 CCACTTGTCGATC--ATCGATGCATCGACGGTCTTTCCGAGCCCGTAGCGCTCGTTCAAC 27774 |||||| || | | | || | | | | || || || || || || || || | Sbjct 9913 CCACTTATCCAACCAACCGGAGGGT--ATGCGCTCACCCAGGCCATACCGATCATTGGTC 9856 Query 27775 AGCAGGTCGTAGAAGATCCACGCGGGATTGTTCGTCCATGCCGGTTTGAACGTGCCGTCC 27834 | ||||| ||||| |||||||| || |||| ||||| || | ||||| || |||||| Sbjct 9855 ACGAGGTCATAGAAAATCCACGCAGGGTTGTCAGTCCACGCAAGCTTGAAAGTTCCGTCC 9796 Query 27835 CACGTGCCCGAGTACGTGCGCGTC--TCAGGATCGTAGTTCGACGGCACACGCACGATCA 27892 || || |||| ||| |||||| | || || ||||||||||| || || | ||| Sbjct 9795 CAGGTTCCCGCGTA--TGCGCGACGATCCTCGTCATAGTTCGACGGGACGCGGATGATTC 9738 Query 27893 GACC--TCGAACGTGGTACGAGCGCACCGGGACCTGCGAGAACGAGCGCGCGTCGAACGT 27950 | || || | || || || ||| | || | |||| | || || | | | Sbjct 9737 GTCCCTTCCA--GTCATAGGATCGCGCGGGTATTGATTGGAACTGGGAGGCATCAATCCT 9680 Query 27951 CATACCCACGAGCGCAGTCATCGGATAGCGCAGCTTGCGGTCGATGATTTCGGTGATCGC 28010 || || || || |||| |||||| || | |||||| ||| || | || || ||| Sbjct 9679 GATGCCGACCAGAGCAGACATCGGGTACCTAAGCTTGGCGTCTATTACCTCCGTAATC-- 9622 Query 28011 CTCGATGTTCACCGTGTCGGCGATCAGCGA-------GCTGTGCGCATTCGGCGTAATGC 28063 | || | || | || ||||||| | ||| | || |||| |||||| | Sbjct 9621 --CCATCTACATAG-GT--TCGATCAGAAATGACACTGCTATTGGCGTTCGCCGTAATTC 9567 Query 28064 GCCGCACGCGCACCAGCCAGCCGGATTTCGCACTCGGCAGCTCGATCCGATGGGAACGCT 28123 |||| || |||||| |||||| || ||| ||| || || || ||||| || || Sbjct 9566 GCCGAACTCGCACCGACCAGCCAGACCGCGCGGCCGGGAGGTCAATTCGATGCGACCG-- 9509 Query 28124 CGTACAGCG--ACGTCGTCTTGCCGTCAAAGGC 28154 || | |||| ||| ||||| |||||||| || Sbjct 9508 CGAATAGCGTTGCGTTGTCTTCCCGTCAAATGC 9476 >seq1976 Length=10667 Score = 105 bits (116), Expect = 2e-18 Identities = 260/390 (67%), Gaps = 6/390 (2%) Strand=Plus/Plus Query 39248 TCCGGATTCAGCAGGCCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTC 39307 ||||| ||| | |||||| ||||| ||||| ||| |||||||| || || |||||| Sbjct 3668 TCCGGGTTCCAGATGCCGCCCCCGACACGCTTGCGCGTATAGAACAGGACATATGGCTTC 3727 Query 39308 GCCGTGTACGGATCGCGCAGCACGCGA-ACCCCGATGCGGTCGATGATCAGATACGTCTG 39366 ||||| || ||||| || | ||| | |||| || || | ||| |||| | | Sbjct 3728 TTGGTGTAGGGGTCGCGAAGGAT-CGACATGCCGACACGATCAAAGATGCGATAAGCTTC 3786 Query 39367 CTGGAAGTCGCCGAAGAGAATCGGCGTCGAGTTCGCCGCCACATCCGGCATGTCCGGCAC 39426 || | | ||| || | | || || |||||| || || |||||||| | | || Sbjct 3787 CTTCATATTGCCAAACACCAGAGGAACCGCGTTCGCAGCAACGTCCGGCATACCAGCCAG 3846 Query 39427 CTCGGTAACCGGATAGCCCGCCAGCGTCGCCGGCTGCCCCGCTACGTACGACGGTTGCCA 39486 |||| | | ||||| ||| || | ||| ||||| ||||| | | | ||| ||||| Sbjct 3847 CTCGTTGAACGGATTGCCAAGCACCTGCGCTGGCTGGCCCGCCTGGAATGGCGGCTGCCA 3906 Query 39487 GAGATAGTTCCCTTGGCCGTCCTTCAGCTTCCGCACCTGACGCTGCGTGTTGCGGTTCAT 39546 |||||| || || || || ||||||| ||| || | || || || || ||||| | Sbjct 3907 GAGATAATTGCCCTGCCCATCCTTCATCTTGCGGATCTTGGCATGGGTTTTCCGGTT--T 3964 Query 39547 CGCGAAGCGGGCGTTGCCCGTGAACGCGCT--CGGCAGGTCGTAGACCAGATCGATGATG 39604 | || | || | | || || || ||||| |||| || |||||||| ||| Sbjct 3965 CCAAAAAGAGCCGCTCCGACCGAGCGATCTTCCGGCAAACCGTACACAAGATCGATAATG 4024 Query 39605 CCGTCCGACGTGATGTCTGCCGCCGCACCG 39634 ||||| || || | || ||||| ||||| Sbjct 4025 CCGTCAGAAGTCAGATCATCCGCCACACCG 4054 Score = 105 bits (116), Expect = 2e-18 Identities = 294/447 (66%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 41404 GGCAAATCCAGCATCTCGCGGACCTCGTTTTGCTTCATCCAAGGAGACTGTCCGCCGGCA 41463 |||| |||| ||| | |||| || ||||| | ||||||| || || ||||| || Sbjct 5877 GGCATATCCTGCAGCCCGCGCACTTCGTTCGCCGTCATCCATGGCTGGTGGCCGCCTGCG 5936 Query 41464 CCGAGCGCCTTCGAGAAGAAAGCGGCTTGGTCGTTCAGCGTGCCGCGCAACAGCGCGCCC 41523 ||||||||||| | |||||| | | || || |||| | |||||||| || ||||| Sbjct 5937 CCGAGCGCCTTGGCGAAGAACTCACCCTGATCTTTCATGGAGCCGCGCAGCAATCCGCCC 5996 Query 41524 TCGTTGAATTTGAATTGCCGCTGACCCAGCATCTTTTCCGGCAGGAAGGCACGAGCCGCC 41583 ||||||| ||||| | || | | | || | || || | ||||| | Sbjct 5997 GCGTTGAACTTGAACTCGTATTGTTCTTTCTCATCGTCGGTGAGAAACGAGCGAGCGCCG 6056 Query 41584 GCTTGCTCCCACGAAACGAACCAGTGCGAAAGCCCGTACTGAATGAAGAAAATCGCGAGC 41643 || |||||||| | ||||| || || | |||| | | |||| | | ||| Sbjct 6057 GCCTGCTCCCATGCGGTAAACCACGGCTGCAGACTGTACCGGACAAAGAGTTGCCCTAGC 6116 Query 41644 TGTTCGATGCCGCTGCCCCAGCTCGTGTCGTCCATCATCAGAAGGGGACGCGGCACACCG 41703 || | ||||||||||||| | ||||| |||| | || || || | |||| ||| Sbjct 6117 GCATCCACGCCGCTGCCCCAGTTGGTGTCATCCAGACTAAGGAGCGGCCTCGGCGTTCCG 6176 Query 41704 TACATGCGCGCGACCTCTTCGATCTGGTGATTTCGGTTCTCGATCTGCTGCGC--CGATG 41761 ||| |||| | |||||||||||||| | || || | || |||||| || ||| Sbjct 6177 AACACGCGCCCTACCTCTTCGATCTGAAGCTTCCGTGTTTCCGCCTGCTGGGCATCGA-- 6234 Query 41762 CTGCGGT--GTTCGAGAACTGCTTCGCTGTCGCACCTTCCTCCAACAGCATCCAGCTACC 41819 ||||||| |||| ||| ||| || | | | || || | |||||||| | || Sbjct 6235 CTGCGGTCAGTTC--AAACGGCTCGGCGTCCATATCCTCTTCAAGGAGCATCCATTTGCC 6292 Query 41820 GGCGTTCTCCGATCCGGTATGGTTCTC 41846 ||| || |||| ||||| | ||||| Sbjct 6293 GGCATTTTCCGCACCGGTGTATTTCTC 6319 >seq1911 Length=5799 Score = 82.4 bits (90), Expect = 2e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 23138 TCGTAGTCGCGCTCGCACTGCTGGCCGGCGATGCGGGCACGGTCAGCGTATTCCGCCAGC 23197 |||||| | || ||||| | | || |||||||||||||| || || |||| ||| Sbjct 5045 TCGTAGGCCCGTTCGCATGTCAGTCCCGCGATGCGGGCACGATCTGCAACGCCCGCAAGC 5104 Query 23198 TCTCCCGCGCGCTCGTCAACGCGGCCGAGCACGTCGGCAAGCAGATCGAGGGCGTCGCCG 23257 || | || || ||| | ||||||| |||| || ||| |||||||||| ||| || | Sbjct 5105 GCTTCAGCTCGATCGATAGCGCGGCCAAGCATGTAGGCGAGCAGATCGACGGCAGCGGCT 5164 Query 23258 GCTGCCGGGCTTCCGGCGGAAGTGGCGGGATGGCGGGCGGCTGCGACG 23305 ||| ||||| | || ||| | |||||| || ||| ||||| || Sbjct 5165 CCTGACGGGCCTGCGTCGGCAAGGGCGGGCTGTTCGGCAACTGCGGCG 5212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143412066680084