Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_007709.1 Length=43785 Score E Sequences producing significant alignments: (Bits) Value seq1577 80.6 7e-11 >seq1577 Length=16492 Score = 80.6 bits (88), Expect = 7e-11 Identities = 161/237 (68%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 5461 CTGCGCCTTGCGATGTTGCAGGCCAGCCTGGCTGAGTACCCGGCCAGCGGTATCGTTATT 5520 || || || || || | |||||| ||| || || || ||||| ||||||||| || Sbjct 2774 CTCCGTCTGGCAATTCTACAGGCCTCCCTCGCAGAATATCCGGCTGACGGTATCGTGCTT 2833 Query 5521 AACCCTATTGACTGGGCGGCGATTGAGTTGGCGAAGGACGCTAACAACCAGTATCTGATT 5580 ||||||| |||||||| | || || || | ||||| | | | ||| || | | Sbjct 2834 AACCCTACCGACTGGGCAGATATCGAACTGACCAAGGATGGTGAGGACCGCTACATCTTC 2893 Query 5581 GGCAATGCCCGTGGCACCCTGACG--CCGACCCTGTGGGGTCTGCCGGTGGTTGCTACCC 5638 | ||||| | || | || || ||| || ||||| | ||||| | ||||| | Sbjct 2894 GCCAATGT--GATCCAGCTTGCCGGTCCGCAGCTCTGGGGACGTCCGGTCATCGCTACTC 2951 Query 5639 AGGCTATGGCACCGGGTGAATTCCTGGTTGGTGCATTTGACTTGGCTGCCCAGATCT 5695 |||| |||| | || ||||||||| ||||||||||| ||||||| |||||| Sbjct 2952 AGGCGATGGATCTGGATGAATTCCTTGTTGGTGCATTCCGGATGGCTGCAAAGATCT 3008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139984998907886