Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3 149 6e-31 >seq3 Length=15630833 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||||||||||||||| |||||||| ||| | Sbjct 4186262 CCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAC 4186203 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| || ||||||||||| || ||| Sbjct 4186202 AAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 4186143 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| |||||| ||||| | ||| | || || | | ||||| Sbjct 4186142 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACT 4186083 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| ||||| || || || |||||||| Sbjct 4186082 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| ||||| || || | || |||||||| || |||||||| ||| || ||| || Sbjct 4185519 ACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCC 4185460 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||||| |||||||| || ||| |||| || || ||||| || || ||||||||||| || Sbjct 4185459 ATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCGGGATTCCTTCCTT 4185400 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| |||||| |||| | ||| | || || | | |||| || | || | Sbjct 4185399 GTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGAT 4185340 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || ||||| || || || ||||| |||||||| Sbjct 4185339 GGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| ||||| || || | || |||||||| || |||||||| || | || | Sbjct 4183822 ACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCC 4183763 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| |||||||| || ||| |||| | | ||||||||| || ||||||||||| || Sbjct 4183762 GTCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTT 4183703 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| |||||| |||| | ||| | ||||||| | ||| | || | ||| | Sbjct 4183702 GTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGAT 4183643 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 ||||| || || | ||||| ||||| || ||||||| Sbjct 4183642 AGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCATGA 4183605 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | || |||||||| || |||||||||||| Sbjct 4185302 CCTCCACGGAGACGAAGAACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAA 4185243 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || ||||| || ||| |||| | | ||||||||| || || Sbjct 4185242 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGA 4185183 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || ||||| ||| | | || |||| | ||| | || || | | |||| Sbjct 4185182 ATTCCCTCCTTGTC-TTGAATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCTTCGAC 4185124 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || ||||| || ||||| |||||||| Sbjct 4185123 CTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 4185076 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| || | ||| || ||||| |||||||| || Sbjct 4184542 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCCTCAAGCTGCTTCCCG 4184483 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| || | ||||| || || || |||||||| ||||| ||| || ||| Sbjct 4184482 GCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTG 4184423 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||| || | || || | || | || | || || || || |||||| Sbjct 4184422 ACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTGATAGTCTTTCCAGTAAGAGTT 4184363 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 4184362 TTCACGAAAATCTGCAT 4184346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471993630380160