Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 154 3e-32 >seq3 Length=15630833 Score = 154 bits (170), Expect = 3e-32 Identities = 236/330 (72%), Gaps = 16/330 (5%) Strand=Plus/Minus Query 42497 CTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGT 42556 || ||||||||||| ||||||||| ||||| || ||||| |||||| | ||||| ||| | Sbjct 12048190 CTCTGAGGCGCGCTTCTTCTACGGATTCCAAATCGCCATCGAGAACATACACTCGGAGAT 12048131 Query 42557 GTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAA 42616 |||| | || || || | ||||| |||| || ||||| | ||||||||| Sbjct 12048130 GTACTCGAAGCTCATCGAGACGTATATCCGCGACGAGAAGGAGCGCATGAAGCTGTTCAA 12048071 Query 42617 GGCCA---TGGAG-ACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGA 42672 |||| | ||| ||| | ||||||||| ||||| ||||||||||| |||| Sbjct 12048070 CGCCATCTTCGAGTTCGA----ATTCATCAAGAAAAAGGCCGACTGGGCGCTTCGTTGGA 12048015 Query 42673 T---CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 | ||| | || | ||| |||||| |||| |||| | || || | ||||| |||| Sbjct 12048014 TTTCCGACA---CCAAGGCATCGTTCGCCGAGCGGCTCATCGCGTTCGCTGCCGTTGAGG 12047958 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATG 42788 ||||||||||| ||| | ||||| || || |||||||||||| || ||| | |||| Sbjct 12047957 GCATCTTCTTCAGCGGCTCGTTCGCGTCGATTTTCTGGCTCAAGAAGCGCGGTCT-GATG 12047899 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATC 42818 || ||| | ||| || ||||| || ||| Sbjct 12047898 CCAGGATTGACCCATTCCAACGAGCTTATC 12047869 Score = 122 bits (134), Expect = 2e-22 Identities = 336/514 (65%), Gaps = 17/514 (3%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 |||||||| |||||||| || |||||||| || || |||||||| || | ||| Sbjct 10144112 CCCCACATATCAAACTGAAGTTGCCCCTTGGAAACTGGAGATCCCTCGTAAGTAGAGTAT 10144053 Query 244358 GGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 || || || || | |||| || || || | || | || |||||||||||||||||| Sbjct 10144052 GGTCCATCTCGTTCAGCCAACTCGCAACTGGCTTCCAACGCAGCGTAGTAGATGGTCTCG 10143993 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCT-TGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 ||||| |||| || | || | ||||| || | ||||||| || | ||||| ||| Sbjct 10143992 AAGATTCTCTTATTGAGATCTCTGGCCTGTGGAG-AGGTGAATGGATAACGCATCAACAT 10143934 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||| || || ||||| || || |||| ||||| || | || ||| |||| ||| Sbjct 10143933 GAAGCAATCAGCGAGTCCTTGGACTCCGAGACCGATTGGACGATGGCGCATGTTCGAGTT 10143874 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 || || || || || ||||| | ||||| | |||||| || || || || Sbjct 10143873 GCGAGCCTCTTCAACTGGATAGTAGTTGACATCGATTATCTTGTTCAGATTCTTTGTTAT 10143814 Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGT 244656 | | || || || ||| ||| ||| || | || | || | | Sbjct 10143813 GACCTTGGTAACCTCAGCGAGCTTGACAAAATCGAAC---------TTCTTGTCGTTTG- 10143764 Query 244657 GATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGA 244716 |||| || ||| | || | | || || ||||| || || ||||| || | Sbjct 10143763 -----TCACGAAACGGTTCAAAGCAATGGATGCGAGATTGCAAACAGCAACCTCATCTGG 10143709 Query 244717 GTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTG 244776 | ||||| || |||||| ||||| | ||| |||||||||||| |||| || ||| Sbjct 10143708 AGCAGAGTACTCGATAATCTCCGTGCACAAGTTGGAGCACTTGATGGTTCCCAAGTTCTG 10143649 Query 244777 GTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 || || |||||| ||| ||| ||||||||| Sbjct 10143648 CTGGTTCGACTTGCGATTGGCGGCATCCTTGTAG 10143615 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||||||||| || || | |||||| ||| ||| | ||| | | | | ||| || | Sbjct 10143189 CATGAAGAGATCTGGCACCCAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCTTCTGG 10143130 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || |||||||| | || | | ||| || |||| |||| | ||||| ||||||| ||| Sbjct 10143129 TCCGGTGTTCTTTCGAAGAGCAACAAACTCGAAGATGTCGGCATGCCATGGCTCCAAGTA 10143070 Query 245131 GACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 || |||| || || || |||||||||||||| || || || Sbjct 10143069 GATGGCGAATGCTCCTGGTCGCTTGTTGCCTCCTTGATCAAC 10143028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944300848024240