Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq1878 150 6e-32 >seq1878 Length=10347 Score = 150 bits (166), Expect = 6e-32 Identities = 522/797 (65%), Gaps = 18/797 (2%) Strand=Plus/Plus Query 17545 ACACGTCGAACGGCAATATCACGGGCTATCGCGTCGACTATGCGATCGACTTGTCGGTCG 17604 |||| ||||| || ||||| ||||| ||||| || || |||||| | | | Sbjct 9384 ACACCTCGAATGGAGATATCGGTGGCTACCGCGTTGAGTACCAGATCGAAGTAAGTGCGG 9443 Query 17605 ACGGCGG-GTCGTATGCGCAGGTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCGCTC 17663 |||| || ||| || || | ||| || |||| || ||||| ||||| ||| | | Sbjct 9444 ACGGTGGTGTC-TACCAGCTCGCGCTTGCGAGTGCATTTGACGGGAAGACAACGCAACGC 9502 Query 17664 TATGAGCGCTCGCATCGGATCGAGCTGCCGCGCGCAAAAAATGGTTGGTTGATCCGCGTG 17723 ||| ||| |||||||| || || || ||| ||| ||| |||| | | || || Sbjct 9503 TATTCGCGGTCGCATCGAATTGACCTCCCGGCCGCGCGGTCTGGCTGGTCGGTGCGAGTT 9562 Query 17724 CGCCGCATCACGCCGAACGCGCACA-CGGCGACGATCGCCGACGCGATCAACATCGAGGC 17782 || || || ||| ||||||| | | | | | | || | || | | | | || | Sbjct 9563 CGGCGAATTACGGCGAACGCCAATAGCAGTGTC-ATTTCTGATCGAACCTATGTAGATGG 9621 Query 17783 GATTACCGAGATCATCGATCGGAAGCTCCGCTATCCGATGACGGCGCTTGTCGGTATGAC 17842 |||||| ||| | || || ||||| | || |||||| | || || ||||| || | Sbjct 9622 GATTACGGAGGTAATAGACGCCAAGCTTAGGTACCCGATGTCTGCTCTGGTCGGCATCAG 9681 Query 17843 GTTCGACGCACGTTCGTTCTCGAGCG-TGCCAGTGCGTTCGTATCACGTGCGAGGGATGA 17901 | | || || |||| | | | | || | ||| || ||| || || ||||| || Sbjct 9682 GATTGATGCCTCCCAGTTC-CAATCAATACCCGCGCGATCCTATGAC-TGGAAGGGACGA 9739 Query 17902 -TCTTCCGAGTCCCGACAAACTACGACCCGGA--GACGCGTACGTACTCGGGTACATGGG 17958 || |||| |||||| | ||||| ||| ||| | |||| | ||| |||| || |||| Sbjct 9740 ATCATCCGCGTCCCGTCGAACTATGACGAGGATCGTCGCGCA--TACGCGGGAACCTGGG 9797 Query 17959 ACGGTACGTTCAAGGCAGCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTACTTC 18018 |||| || |||||| || ||||| |||| || |||||| | | ||| | ||| | Sbjct 9798 ACGGAACTTTCAAGCTTGCGTGGACTGACAACCCTGCGTGGATTTTCTATGACCTCGTGA 9857 Query 18019 TCGACAAGCTCAACGGATTGGGTGACCGTGTCGATGCTTCGATGG--TCGATAAGTGGGC 18076 | | | | | || ||||||| || | | || || | | | |||||||||| Sbjct 9858 CCAATGATCGGTATGGCCTGGGTGAGCGCAT--ACCCTCCGGTTGGTTGGATAAGTGGGG 9915 Query 18077 GCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCAAGGA 18136 | |||| || || || |||||||| ||||| ||| |||| || ||||| | || Sbjct 9916 GTTGTATCAGATAGCCCGGTACTGCGATGAACTAGTGCCCGATGGATTTGGCGGGCAAGA 9975 Query 18137 GCCGCGCTTCACCTGCAACTGCGTGCTTCAGACGCGCGCGGACGCATTCAAGGTGGTACA 18196 ||| |||||||||||||||||| | ||||| ||||||||| | ||| | || Sbjct 9976 GCCACGCTTCACCTGCAACTGCTATTTGCAGACAGCCGCGGACGCGTATCGGGTTTTGCA 10035 Query 18197 GGATCTCGCGAGCGTCTTTCGCGGCATTTCGTACTGGGGCGCCGGGTCGGTGGTCG-CGT 18255 ||| || ||| || || || || || ||||||||| ||| || | | ||| Sbjct 10036 GGACCTGGCGTCGGTGTTCCGGGGAATGACGTACTGGGCGAATTCGTCAGTCTTTGCCGT 10095 Query 18256 CGGCCGATATGCCGTCCGATCCGGTCTACCTGTACACGGCCGCGAATGTCGTCGGTGGTT 18315 | || |||||||| |||||| ||||| | |||| | || || || ||| || Sbjct 10096 C-GCAGATATGCCCGGCGATCCCGTCTATACCTTCACGTCGGCCAACGTGATCGACGGCC 10154 Query 18316 CATTCAAGTACGTCGGC 18332 ||| || ||||||||| Sbjct 10155 GATTTAATTACGTCGGC 10171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155629195302168