Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq1971 96.9 9e-16 >seq1971 Length=14413 Score = 96.9 bits (106), Expect = 9e-16 Identities = 169/239 (71%), Gaps = 14/239 (6%) Strand=Plus/Minus Query 2684 CCCGGTGTCGGCTGGATGCTGTATCTCCCCCAGGCGATCACCGTGCAGCAGGTGCCCGAG 2743 ||||| |||||||||||||| || || ||||| | |||||| |||| || || || Sbjct 6420 CCCGGCGTCGGCTGGATGCTTTACCTTCCCCAAGTGATCACTCCCGAGCAAGTCCCGGAA 6361 Query 2744 GCCGGCGCGCTGATGCCGGT----GCTGGGCGACAAGAAACATCAGGCCGGCACGATCAT 2799 ||| || ||||| || || |||| || |||||||| ||||||| ||||| Sbjct 6360 GCCCAGGCTCTGATTCCCGTTCCCGCTGCCGGA-AAGAAACAAA---CCGGCACCATCAT 6305 Query 2800 TGTCAGCGTGACCGACGAGCCGTTTTGCGACCTGAACCCCG--AGC-ACGTCAGGATCGC 2856 |||||||| | |||| ||||| || ||| || || ||| ||||| | || Sbjct 6304 CGTCAGCGTCGCGAACGAAGTGTTTT-CG--CTGGACAACGCCAGCCACGTCGAATTGGC 6248 Query 2857 CAACAAGATCGAGGTGCGGCTGGCCGACCAGGGGCTGCTGCCGCGCTACGCCGACCTCT 2915 ||| |||||| |||| |||| ||||||| |||||||||||||| || || |||| Sbjct 6247 GAACCGCATCGAGATGCGCCTGGTGGACCAGGACCTGCTGCCGCGCTATGCGGATCTCT 6189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123905619304436