Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq1247 104 7e-18 >seq1247 Length=56584 Score = 104 bits (114), Expect = 7e-18 Identities = 133/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 42809 CCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGG 42868 ||||| |||| ||| | |||| | || | |||||||| ||||| | || | |||||| Sbjct 7170 CCGAAACGCAAGGCATTCATGGCTGCAATTGGGCGAGCACCCATTGTGAAAACGTCGCGC 7111 Query 42869 ACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTG 42928 | |||||||| || || |||||||||||||| | |||||||| |||| |||||||| Sbjct 7110 AGAATGCCGCCAACGCCTGTCGCCGCGCCCTGATAAGGCTCGATATACGACGGGTGGTTA 7051 Query 42929 TGACTCTCCGCCTTGAACGTGACCGCCCA---TCCCTCGCCGACGTCGATGACGCCCGCG 42985 || || ||| |||||| ||| | || || ||||| | ||| | ||||| ||| Sbjct 7050 TGGCTTTCCATCTTGAA---GACGACGCAGTCGCCATCGCCAATGTCAACAACGCCAGCG 6994 Query 42986 TT 42987 || Sbjct 6993 TT 6992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148240680375926