Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3 145 2e-29 >seq3 Length=15630833 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || ||||| | ||| || |||||||| || || || | Sbjct 4185758 CCTCCACGGAGACGAAGGACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGAC 4185699 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| ||||| || || |||||||| || | ||||| |||| Sbjct 4185698 AGAGTTCTACCATCTTCCAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGG 4185639 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || |||||||| || | || | ||| || Sbjct 4185638 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACC 4185579 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||| || ||||||||||||||||| ||||||||| Sbjct 4185578 TCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185531 Score = 134 bits (148), Expect = 3e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 288235 ATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATA 288294 ||| | | || ||| || || || | || |||||||||| || || |||||||| Sbjct 4186274 ATTTACATATCTCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATG 4186215 Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || ||||||| | ||||||||||| || | || ||||| |||||||||| ||||| Sbjct 4186214 TTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGC 4186155 Query 288355 TGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG 288414 || |||||||||||| || || |||||||| || || || || || || | || Sbjct 4186154 TGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCA 4186095 Query 288415 CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| | ||||| ||||| ||||| ||||||||||| || |||||||| Sbjct 4186094 GAAGCCTCGACTTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| |||||||| | || || || ||||| || || |||| Sbjct 4185302 CCTCCACGGAGACGAAGAACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAA 4185243 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | ||| ||||| |||||||| || | ||| || ||| Sbjct 4185242 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGA 4185183 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || || || || || ||||| || || || || | || | ||| || Sbjct 4185182 ATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCTTCGACC 4185123 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||| || ||||||||||||||||| ||||||||| Sbjct 4185122 TCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185075 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| || ||||| || || | ||| ||||| |||||| Sbjct 1643904 TCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAG 1643963 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | || || ||| |||||||| || || ||||| || || || || || Sbjct 1643964 ATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTC 1644023 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| | || |||||||| || || ||||| || ||||||||||||||| Sbjct 1644024 TCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACG 1644083 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1644084 AAGATTTGCAT 1644094 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| | || ||||| || || | || ||||| |||||| Sbjct 4185494 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAG 4185435 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| || || ||| ||||| ||||||||| || || |||||||| ||||| || Sbjct 4185434 ATCAATCGTTGCTGA---TCTGGCGGGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACA 4185378 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | ||| ||||| | ||||| ||||| ||||| || |||||| Sbjct 4185377 TTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTAAGCGTCTTG 4185318 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 4185317 ACGAAGATCTGCAT 4185304 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || | |||||| || | || ||||| |||||| Sbjct 4183797 TCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAG 4183738 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || |||||||||||| || || |||||||| ||||| || || Sbjct 4183737 ATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTC 4183678 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| | || || || || ||||| || || || |||| || |||||| Sbjct 4183677 TCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTTTCCTGTCAACGTTTTGACG 4183618 Query 288463 AATATCTGCATTAT 288476 || || ||||| || Sbjct 4183617 AAGATTTGCATGAT 4183604 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || | ||| || || | || ||||| |||||| Sbjct 4184764 TCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCCAGCTGCTTTCCGGCGAAG 4184705 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| ||| ||||||||| || || || ||||| || ||||| || || Sbjct 4184704 ATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTC 4184645 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | ||| ||||| | ||||| ||||| ||||| || ||||||||| Sbjct 4184644 TCGATTGTGTCAGAAGCTTCCACTTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTGACG 4184585 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 4184584 AAGATTTGCAT 4184574 Score = 100 bits (110), Expect = 7e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | ||| || ||||| || || | || ||||| ||||| Sbjct 4184026 TTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCCTCAAGCTGCTTTCCGGCGAA 4183967 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||| ||| ||||||||| || || || || || || || || || || Sbjct 4183966 GATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTGACATT 4183907 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | |||| | || || || | ||||| ||||| || || || |||||||| Sbjct 4183906 CTCAATGGTATCGGAAGCCTCGACCTCCAAAGTGATGGTCTTTCCAGTGAGTGTCTTGAC 4183847 Query 288462 GAATATCTGCATT 288474 ||| || |||||| Sbjct 4183846 GAAGATTTGCATT 4183834 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || | ||| || ||| ||||| || || |||||||| || Sbjct 4184944 TTACCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 4184885 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || || | || | ||| |||||||| ||||||||||| |||||| Sbjct 4184884 GCTTTGACATTCTCAATGGTGTCCGAAGCTTCAACTTCGAGGGTGATCGTCTTTCCGGTC 4184825 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 | ||||||||||| ||||||||| Sbjct 4184824 AACGTCTTGACGAAGATCTGCATT 4184801 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 269149 ATGATCGGTATGAA-TGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT 269207 |||||||| ||||| ||||| || ||| || || ||||| ||||| || |||| | | Sbjct 12047096 ATGATCGGAATGAACTGCCGG-CTGATGTCGCAGTACATCGAGTTCGTTGCCGATCATCT 12047038 Query 269208 CTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGA 269267 || || ||||| | || || ||||||| |||||||| |||| ||| ||||| Sbjct 12047037 GCTCCAGGAGCTCGGATGCGATAAGCTGTACAACGTCAAGAATCCATTCGACTTCATGGA 12046978 Query 269268 ACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACG 269327 || ||| |||| |||||||| ||||||||||| || || || ||| ||||| || Sbjct 12046977 GAACATCTCGATCGATGGAAAGACCAACTTCTTCGAGAAACGCGTTTCCGAGTATCAGCG 12046918 Query 269328 TCCTGGTGTAATG 269340 || || || ||| Sbjct 12046917 ACCGGGCGTCATG 12046905 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||||| || || ||| |||||||||||| || || ||||| || Sbjct 4184205 TTACCGGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTA 4184146 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || || || || | ||| | ||| |||||||| ||||| || || || || Sbjct 4184145 GCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGTG 4184086 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| ||||||||| Sbjct 4184085 AGTGTCTTGACGAAGATCTGCATT 4184062 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||||| | |||||| |||||||||||| || |||||||| || || Sbjct 4185899 CCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCC 4185840 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | || | ||| ||||| | ||||| ||||| ||||| || Sbjct 4185839 TTGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTAAGC 4185780 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| Sbjct 4185779 GTCTTGACGAAGATCTGCAT 4185760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179605293567822