Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 165 1e-35 >seq3 Length=15630833 Score = 165 bits (182), Expect = 1e-35 Identities = 699/1089 (64%), Gaps = 75/1089 (7%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || |||||||| |||| |||||| | || | ||||| |||| | Sbjct 10144659 GTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGC 10144600 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 || | |||| | ||||| || ||| | |||||||||||||||||| ||| Sbjct 10144599 GGCGTAGCTTGGCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCC 10144540 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 |||||| || ||||| || || | |||||| ||| ||||| ||||| ||| || Sbjct 10144539 ACGATCGGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAG 10144480 Query 113782 GTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATGGAGCCACCCGCCTTGACCA 113840 | ||| || || ||||| || ||| || ||||||||||||| ||| ||| | | Sbjct 10144479 TTCCTTGATGTCGTCTGGAAT-TCCTGGAATATTTTGGATGGATCCA---TTGTTGGCGA 10144424 Query 113841 TGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGAT 113897 ||| ||| |||||| || | ||||| | || ||| ||||||| || | | Sbjct 10144423 TGAGACGATTCTTCATGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGT 10144364 Query 113898 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTG 113956 | |||||| | || ||||| | ||| || | ||| ||||| || | ||| Sbjct 10144363 GTGGATTGACGATTTGGAAGTCACCGGAGAGCACACGAC-GAGAGTAGATGTTAGAAGTG 10144305 Query 113957 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGT 114016 |||||||||| | || ||||| || | ||| || || ||||| || || ||||| || Sbjct 10144304 TATGGCTCAATCGATTCGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGA 10144245 Query 114017 GCCATGAGAAGGCTGTTACGGAGACCCT--------------------TTT------CCC 114050 |||||||| || ||||| || | ||| | ||| | | Sbjct 10144244 GCCATGAGGAGACTGTTGCGAACACCGTGTCTGAAAGAAAATATAATATTTTGAATACTC 10144185 Query 114051 T-AAT----------------GCG--TTCCTTG---AGGGCGTCCCAGTCGTAGTTGAGC 114088 | ||| ||| || |||| || ||||||||| | | |||| Sbjct 10144184 TGAATTTTCAAATCTCACTTGGCGATTTTCTTGCGAAGCTCGTCCCAGTTGCA-TTGA-- 10144128 Query 114089 TTTGTC----TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCC 114144 || ||| | | | ||||||||||||||| || || | ||| |||| ||||| Sbjct 10144127 TTAGTCGGAGTAACTC-CCCACATATCAAACTGAAGTTGCCCCTTGGAAACTGGAGATCC 10144069 Query 114145 CTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGC 114204 ||| | || |||||| || || || ||||| ||| | || || || | || || Sbjct 10144068 CTCGTAAGTAGAGTATGGTCCATCTCGTTCAGCCAACTCGCAACTGGCTTCCAACGCAGC 10144009 Query 114205 GTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCG-GAATCAAACG 114263 || || || ||||| || || | ||| | | |||||| || | || || | Sbjct 10144008 GTAGTAGATGGTCTCGAAGATTCTCTTATTGAGATCTCTGGCCT-GTGGAGAGGTGAATG 10143950 Query 114264 CGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGA 114322 || ||| ||| || || ||| ||||| |||||||| ||||| || ||||| ||| Sbjct 10143949 -GATAACGCATCAACATGAAGCAATCAGCGAGTCCTTGGACTCCGAGACCGATTGGACGA 10143891 Query 114323 TGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTA 114382 || | ||| || || || ||||| || || ||||| | || |||||| | | | Sbjct 10143890 TGGCGCATGTTCGAGTTGCGAGCCTCTTCAACTGGATAGTAGTTGACATCGATTATCTTG 10143831 Query 114383 TTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGA 114442 || ||||| || || | ||||| || | ||| ||||| | |||| |||| | Sbjct 10143830 TTCAGATTCTTTGTTATGACCTTGGTAACCTCAGCGAGCTTGACAAAATC-GAACTTCTT 10143772 Query 114443 GTCTCTTCATTGAC-ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 114501 ||| || | || | || || || || || || ||||| || |||| ||| Sbjct 10143771 GTCGTTT--GTCACGAAACGGTTCAA-AGCAATGGATGCGAGATTGCAAACAGCAACCTC 10143715 Query 114502 ATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAA 114561 ||| | ||| |||||| ||||| ||||| ||||| || || | ||| ||||| ||||| Sbjct 10143714 ATCTGGAGCAGAGTACTCGATAATCTCCGTGCACAAGTTGGAGCACTTGATGGTTCCCAA 10143655 Query 114562 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGT 114621 ||||| || || ||||| || ||||||||||| |||||||| || || Sbjct 10143654 GTTCTGCTGGTTCGACTTGCGATTGGCGGCATCCTTGTAGGTGATGTATGGAAGTCCAGT 10143595 Query 114622 CTCCGTTTG 114630 ||| |||| Sbjct 10143594 CTCGATTTG 10143586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 130/185 (70%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 126077 GAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAA 126136 ||||| || || || || | || ||||||||| ||||| |||||||| | ||||||| Sbjct 12047867 GAGATAAGCTCGTTGGAATGGGTCAATCCTGGCATCAGACCGCGCTTCTTGAGCCAGAAA 12047926 Query 126137 ATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGC 126196 |||| || || || ||||||||| ||||| || |||||||| | ||| ||| Sbjct 12047927 ATCGACGCGAACGAGCCGCTGAAGAAGATGCCCTCAACGGCAGCGAACGCGATGAGCCGC 12047986 Query 126197 TCAGCAAAGGAGCGCGACTTTGTGTC---AAACCACTTCATCGCCCACTGCGCCTTTTTC 126253 || || || || | ||| ||||| || ||| | |||||| | ||||||||| Sbjct 12047987 TCGGCGAACGA---TGCCTTGGTGTCGGAAATCCAACGAAGCGCCCAGTCGGCCTTTTTC 12048043 Query 126254 TCGAT 126258 | ||| Sbjct 12048044 TTGAT 12048048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597329339976920