Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 >seq3 Length=15630833 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||||| || ||||| |||||||| || | | ||||| |||| Sbjct 4186247 AGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCC 4186188 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | || | ||||||||||| || || |||||||| || ||| Sbjct 4186187 TCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 4186128 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || ||| || || ||||| | || | |||| Sbjct 4186127 TGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTC 4186068 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | ||| || || || || ||||| Sbjct 4186067 TTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| |||||||| || || |||||||| || | || ||| || | || ||||||||| Sbjct 4184037 TGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCCTCAAGCTGC 4183978 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | ||||| | |||||| || || || ||||| || || ||||| || || Sbjct 4183977 TTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTG 4183918 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | ||||| || || || || | ||| | |||||| || || Sbjct 4183917 GCCTTGACATTCTCAATGGTATCGGAAGCCTCGACCTCCAAAGTGATGGTCTTTCCAGTG 4183858 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | || || ||||| ||||||||| Sbjct 4183857 AGTGTCTTGACGAAGATTTGCATT 4183834 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | || | |||| ||||||||||| ||| Sbjct 4183803 GTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCGTCCTCAAGCTGCTTTCCG 4183744 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| | ||||||||| || || |||||||| || ||||| | |||| ||||| Sbjct 4183743 GCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGA-TTTTGGCTTT 4183685 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | ||||| || ||||| || | || | || || || ||||| || Sbjct 4183684 GACATTCTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTTTCCTGTCAACGT 4183625 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| ||||| |||||||| Sbjct 4183624 TTTGACGAAGATTTGCAT 4183607 Score = 105 bits (116), Expect = 7e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || || || ||||||||||| | | || || | || Sbjct 4185288 AAGAACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGTCCATC 4185229 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || ||||| ||||| | ||||| | ||||||||| || |||||||| || || || Sbjct 4185228 CTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTC 4185169 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | || ||||| ||| ||| | || ||| || || || || | ||| | || Sbjct 4185168 TTG-AATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGG 4185110 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || |||| ||| || ||||| || |||||| Sbjct 4185109 TCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185075 Score = 100 bits (110), Expect = 3e-16 Identities = 275/416 (66%), Gaps = 9/416 (2%) Strand=Plus/Minus Query 154872 GGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACC 154931 || |||||||| ||||| || | || || || |||||||| || | ||| |||||| Sbjct 10143230 GGGCACATCAACGACCAATCTTGATCTTTTTCGACACGTTTCATGAAGAGATCTGGCACC 10143171 Query 154932 CACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTT--A 154989 || | ||| | ||||| ||||| || || ||||| | || |||| |||| | Sbjct 10143170 CAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTT---CTTTCGA 10143114 Query 154990 AATTCAAAAAA-TCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCT 155048 | ||| ||| || | |||||||| ||||| ||||| || || | ||| | || ||| Sbjct 10143113 AGAGCAACAAACTCGAAGATGTCGGCATGCCATGGCTCCAAGTAGATGGCGAATGCTCCT 10143054 Query 155049 --TTGCGTTTT-CCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAAT 155105 | || | || ||||||||||| |||| ||| || || ||||| || || | || | Sbjct 10143053 GGTCGCTTGTTGCCTCCTTGATCAACGTAACGAGCAGTGTTGTTGTAGACACGAAGCATT 10142994 Query 155106 GGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCT 155165 ||| | || ||| || |||||||| || ||| | || ||||| Sbjct 10142993 GGTATGAGTCCATTGGATGTTCCGTTGGTTCCGGCAATCACTGAACCAGTTGCACGGATC 10142934 Query 155166 TTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAA 155225 || || ||||| | || | |||||| | || || || | || || | | |||| Sbjct 10142933 TTGTGCACATTGAGACCGATTCCTCCGGCACTCTTTGAGATCAGAGCGCACTGCTTCAAA 10142874 Query 155226 GTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGA 155281 || ||||| ||||| || ||| || ||| |||||||||||| || ||||| Sbjct 10142873 GTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAGCATGAAGA 10142818 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| || || || || || |||||||| || | || ||| || | || Sbjct 4184558 AAGAACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATC 4184499 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||| ||||| | || | | ||||| || || ||||||||||| || || Sbjct 4184498 CTCAAGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTC 4184439 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | || ||||| || || | || || ||| || || |||| ||| | | Sbjct 4184438 CTGGA-TCTTGGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTGATAG 4184380 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || || | |||||| |||||||| |||||| Sbjct 4184379 TCTTTCCAGTAAGAGTTTTCACGAAAATCTGCATT 4184345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || || || | || || || ||||| ||| Sbjct 1643898 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCG 1643957 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | |||||||| || ||||||||||| || ||||| || || ||| Sbjct 1643958 GCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTG 1644017 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| ||| || ||||| | || | ||||| || |||| ||| Sbjct 1644018 ACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGAGTC 1644077 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 1644078 TTGACGAAGATTTGCAT 1644094 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | |||||| || ||||| ||||||||||| | | || | | || Sbjct 4185744 AAGGACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGACAGAGTTCTACCATC 4185685 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| ||||| | ||||| | || ||||| || || |||||||| || || Sbjct 4185684 TTCCAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTATC 4185625 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || ||| || || || || | ||| | ||| Sbjct 4185624 CTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGT 4185565 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || |||| ||| || ||||| || |||||| Sbjct 4185564 CTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185531 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||| || | || ||||||||||| || Sbjct 4185500 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCCTCAAGCTGCTTTCCA 4185441 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || ||||| || || || |||||||| || ||||| | |||| ||||| Sbjct 4185440 GCGAAGATCAATCGTTGCTGATCTGGCGGGATTCCTTCCTTGTCTTGGA-TTTTGGCTTT 4185382 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || || || || ||||| | ||| | |||||| ||||| | || Sbjct 4185381 GACATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTAAGCGT 4185322 Query 64426 TTTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 4185321 CTTGACGAAGATCTGCAT 4185304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499624508175560