Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq2875 199 6e-46 >seq2875 Length=2430 Score = 199 bits (220), Expect = 6e-46 Identities = 351/505 (70%), Gaps = 16/505 (3%) Strand=Plus/Plus Query 41381 CAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAA 41440 ||||| || |||||||| ||||||||||||||| ||||||||| ||||| || || | Sbjct 934 CAGCTGGGTACGCTGGGCGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACGGAC 993 Query 41441 GACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCAC 41500 |||||| | |||||||| ||||| || ||||| |||||| | |||||| || Sbjct 994 ACGGTGTGGGTGATGCTGCACAGCGGATCACGCGGCACCGGCAACCTGATCGGCACCTAC 1053 Query 41501 TACATCGA----GCGTGCGCAGAAGGAGTGCGGCATGTGGCACAG---CAGCCTGCCGCA 41553 | |||||| ||| ||| ||| | |||| || || | | | ||||||| | Sbjct 1054 TTCATCGAGAAGGCGCGCGAGGAACTGGCCCGGCGCGT-GCTCGGCTTCCACCTGCCGGA 1112 Query 41554 CAACGATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCAT 41613 ||| || || ||||||||| || | | ||| ||| || ||||||| | | Sbjct 1113 CAAGGACCTGGCGTTCTTCATGGAAGGCGAGCCGCTGTTCGATGACTACGTTGAAGCGGT 1172 Query 41614 GCTGTGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGG---TGATGTTGCAGATCGTGAT 41670 | |||||||||||||| ||| |||||||| || | || |||||| || | ||| | Sbjct 1173 GTCGTGGGCGCAGGACTACGCCCGGCAGAACCGCGAGGCAATGATGTCGCGG---GTGCT 1229 Query 41671 CCAAGCGCTGCGTCGTCATCTGCCGGCCTTCGAGCTGACGGAAGAGGCGGTGAACTGCCA 41730 | | |||| | || |||||| ||| ||||| | | ||||||||||||||| Sbjct 1230 GGCCGAGATGCGCCATCGCCTGCCGAAGTTCCAGCTGGCAGCGATGGCGGTGAACTGCCA 1289 Query 41731 CCACAACTATTGTG-AGCAGGAGAACCACTTCGGGCGCAACGTGTGGGTCACGCGCAAGG 41789 |||||||| ||| || |||||| ||| || | | || ||| |||||||||| Sbjct 1290 TCACAACTA-CGTGCAGAAGGAGACGCACCACGACCAGGAGCTGCTGGTGACGCGCAAGG 1348 Query 41790 GTGCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGT 41849 ||||||| |||| || || | ||| ||||| |||||||| || |||||| ||| Sbjct 1349 GTGCGGTCAGTGCGCGCGAGGGCGAGCTGGGCATCATTCCCGGCAGCATGGGCACGCGCA 1408 Query 41850 CGTACATCGTCAAGGGCAAGGGCAA 41874 |||||||| ||||||||||| Sbjct 1409 GCTACATCGTGCGTGGCAAGGGCAA 1433 Score = 105 bits (116), Expect = 1e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 40998 TGATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGGTGATCGCTACGCAAG 41057 |||||||||||| |||| |||| ||| || || || ||||||||| | ||||| | Sbjct 605 TGATGCCGGACGTGCACCTGGGCAAGGGCGCGACCGTGGGCTCGGTGATCCCGACGCAGG 664 Query 41058 GTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGCATGGTGGCGGTTCGTA 41117 | || ||||| ||||| ||||| ||||| ||||||||||||||||||| ||||| || | Sbjct 665 GCGCGATCATCCCGGCCGCGGTCGGCGTCGACATCGGCTGCGGCATGGCCGCGGTGCGCA 724 Query 41118 C 41118 | Sbjct 725 C 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739857951298600