Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_011103.1 Length=60195 Score E Sequences producing significant alignments: (Bits) Value seq1577 210 8e-50 >seq1577 Length=16492 Score = 210 bits (232), Expect = 8e-50 Identities = 553/830 (67%), Gaps = 27/830 (3%) Strand=Plus/Plus Query 8127 CGCGGCATCAATCGCCAGTCCAACATGTCGACGTCCGAAGTTCC---GGATTGCGCAGAC 8183 ||||| |||||||||||| ||||||| ||| | |||||||| ||| || | ||| Sbjct 5969 CGCGGTATCAATCGCCAGCACAACATGCAGACCACGGAAGTTCCACAGGACTGTGATGAC 6028 Query 8184 GAGTCGCTCCCGGCAGCCGTCGAGCGCGCGGTGCAGTCGCAGGAAGTGACTATTTCCGGC 8243 || || ||| | || | ||||| ||||| ||||| ||||| |||||| ||| | Sbjct 6029 GAAAGCCTGCCGTCTGCAATTGAGCGGGCGGTACAGTCATCTGAAGTCACTATTCCCGCC 6088 Query 8244 TCCGGCGTCTGGGCTGCGGAAAGCCATGAGGTCATGCTCAACTGGTGGTACTCCGGCGCC 8303 ||| || ||| | | | ||||| || | ||| | | |||||||| || ||| Sbjct 6089 AGCGGTGTGTGGTCGTCTCAGAGCCACGAAATGATGATGGATTGGTGGTATTCGGGCCAG 6148 Query 8304 ACAAAGAGCATTCGTGTCCAGCACGTCAACGCCGCTGTAGGCGACACTGAATACGAAACC 8363 || |||| ||| || || | |||||||| || || ||||| || || ||||| ||||| Sbjct 6149 ACCAAGAACATCCGGATCAAACACGTCAAGGCAGCCGTAGGTGATACCGAATATGAAACT 6208 Query 8364 GGCAACGCTTACCTCGTATCCATCAGCAATCAGGCCGAACGCGGCACGAAGGTGACTGCC 8423 || || | |||||| ||| |||| | |||| || ||| || | || Sbjct 6209 GGTCCGGCCTTCCTCGTCAGTCTCAACAATGCTGTCGAAAAGGGTCAGAAAGTTTCGGCA 6268 Query 8424 GAAATCTCGATCGAGTTCGACGGGATTCCGACGCGCACGGCGAAGGTATAACGC---ATG 8480 ||| | ||| |||| || || |||| || ||||| || |||| ||| ||| Sbjct 6269 GAACTGGATATCCAGTTTGATGGCGTTCCAACCCGCACCGCCAAGGC----CGCCTGATG 6324 Query 8481 CG-CGGTGCAGAGGAGATAGTGTGGGCGGGAGGGGAACACCCCTTCCGCCTCGGCATTGG 8539 || | | |||| | || || ||| |||| || || ||| ||| || | || || || Sbjct 6325 CGACCATCCAGAAGT-ATTGTCTGGCCGGGTGGTGAGCACGATTTCTGCTTGGGTATCGG 6383 Query 8540 CGAACTTCGTGCGATCGAGCAGAAGTGCGACGCTGGCACGGCT--GTCGTGCTCATGCGG 8597 ||||| |||||| | ||||||| | |||||||| ||| ||| | | | | || Sbjct 6384 TGAACTCCGTGCGCTTGAGCAGAGATCTGACGCTGGGT--GCTTCGTCATATTGACGAGG 6441 Query 8598 TTGCTCTCAACTGCCTGGAAGATCGACGATGTCGTGGCACCGATCAGGCTTGGCCTGGTG 8657 | ||| || || ||||||||||| || ||| | || ||| | |||||||| | Sbjct 6442 CTCCTCACATCTCAGTGGAAGATCGATGACGTCCTTCAGCCTATCCGACTTGGCCTTATC 6501 Query 8658 GGCGGCGGGATGTCGGAGCGCGATGCGCAGAAGGCGATCGATGCGGCTATGGACGTTGCC 8717 |||||||| ||| || || || ||||| || | ||| ||| ||| | || | Sbjct 6502 GGCGGCGGTATGGATGATCGTGAAGCGCAAAAAGTGATTGATCGGGCGCTCGAAACCTCA 6561 Query 8718 AGTCCGTACGCTCTCGCCGTCACCGCAGC-CGAAGTCCTGCGTCGGTTCGTCATGTGGGA 8776 || || ||| || |||||| | ||||| | | || | || ||| | |||||||| Sbjct 6562 AGCCCTTACAGCCTAGCCGTCCCGGCAGCGAGCATTCTTCATTCATTTC-TAATGTGGGA 6620 Query 8777 -GA--ATCCCGACCAGCCGGGGGAGCCGGGGGCGGGGATAGAGGCGGAAAGCAACTAGAC 8833 || | |||| |||||||||||| || ||||||| ||| ||||| ||| Sbjct 6621 TGAAGAGGCCGATCAGCCGGGGGAGTTGGCAGCGGGGA---CGGC-AAAAGC--GCGGAC 6674 Query 8834 CCGCTTCCGAACGGCGCGACGCGCTGGTCGACGTACTATGCCGCTGGCGCGGTGATGGGC 8893 ||||| |||||||| ||||| |||||| || ||| |||||| | |||| Sbjct 6675 CCGCTCCCGAACGGGAAAACGCGGTGGTCGCAGTTCTACATGAGTGGCGCAGCATTGGGG 6734 Query 8894 TTCACCCCTCGCGCCATCGACGACATGACGTTGTGGGAGTTCGACTGCTG 8943 | | ||||| ||||||||||||| ||||||||||| ||||||| Sbjct 6735 CTTTCACCTCGTCAGGTCGACGACATGACCATGTGGGAGTTCAACTGCTG 6784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192494972896466