Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 >seq3 Length=15630833 Score = 147 bits (162), Expect = 2e-30 Identities = 403/608 (66%), Gaps = 16/608 (3%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTC- 93782 ||||||| ||||| || || ||| || ||||| |||||||| | ||| || Sbjct 10142605 TACTTTGGATTCAAGACGCTCGAGCGTTCTTACCTTCTCAAGATCAACA--AGGAAGTCG 10142662 Query 93783 -CGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACAT-G 93840 |||| |||| || ||| || ||||||| |||||||| || || ||||| ||||||| | Sbjct 10142663 TCGAGAGACCACAGCAGATGTTGATGCGTGTCGCCATTGGAATCCACGGAAACGACATTG 10142722 Query 93841 CCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC----CATGGCCAC 93896 ||| ||| | | | || ||| ||| | |||| | |||| | | Sbjct 10142723 CCGCGGCGATTGAGA-CGTACAACTTGATGTCGGA---GCGGTACATGACACATG-CTTC 10142777 Query 93897 CCCGACCCTGTTCAACGCGGGGACCC-CGGTGCCACAGATGTCTTCGTGTTTCCTGATGA 93955 || || || |||||| | || || | || |||||||||||||| || ||| || ||| Sbjct 10142778 GCCAACTCTTTTCAACTCTGGAACATGCCGT-CCACAGATGTCTTCATGCTTCTTGTTGA 10142836 Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 ||| | | ||||| || |||||| | ||||| | ||| | || || |||| Sbjct 10142837 CGATGAGCGAGGACTCGATTCTCGGAATCTACGACACTTTGAAGCAGTGCGCTCTGATCT 10142896 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 |||| || || |||||||| ||| ||| ||| | | ||||| | ||||| | Sbjct 10142897 CAAAGAGTGCCGGAGGAATCGGTCTCAATGTGCACAAGATCCGTGCAACTGGTTCAGTGA 10142956 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 | ||| ||||| || || ||||| || ||| | || ||||| || |||| ||||||| Sbjct 10142957 TTGCCGGAACCAACGGAACATCCAATGGACTCATACCAATGCTTCGTGTCTACAACAACA 10143016 Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 | || || ||||| || || || || | | | || | ||||| |||| | | Sbjct 10143017 CTGCTCGTTACGTTGATCAAGGAGGCAACAAGCGACCAGGAGCATTCGCCATCTACTTGG 10143076 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 |||| ||||| || ||| | | || | | || ||||||||| ||| || Sbjct 10143077 AGCCATGGCATGCCGACATCTTCGAGTTTGTTGCTCTTCGAAAGAACACCGGACCAGAAG 10143136 Query 94256 TGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCG 94315 ||| | || | ||| | |||| ||||||||||||||||| || || |||||||| | Sbjct 10143137 AGGAACGTGCTCGTGACTTGTTCTTGGCTCTCTGGGTGCCAGATCTCTTCATGAAACGTG 10143196 Query 94316 TCGAGAAA 94323 |||| ||| Sbjct 10143197 TCGAAAAA 10143204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494703108054040