Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq1462 315 8e-81 seq1297 89.7 5e-13 seq1245 89.7 5e-13 >seq1462 Length=14439 Score = 315 bits (348), Expect = 8e-81 Identities = 534/769 (69%), Gaps = 6/769 (1%) Strand=Plus/Plus Query 156109 CTGGACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCG 156168 ||||| || |||||| | ||||||| || || | || || |||||| ||| ||| Sbjct 2 CTGGATACGATCCAGAACGCCGTCGGTGCTGTGACACTGATGGATGACGCCTCCACGCCG 61 Query 156169 CACGAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTAC 156228 || || || || || | ||||| | || |||||| || || ||||| || Sbjct 62 CATGAAGAAGCTGTTCTGTCGAACATTTCCTTTATGGAGGCGGTTCATGCACGGTCTTAT 121 Query 156229 TCGAACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCG 156288 ||| |||||||||||||||||| || || | |||| || | ||||||||| Sbjct 122 TCGTCGATCTTCTCGACGCTGTGCCTGACGCCTGACGTAGACGATGCCTATCGCTGGTCG 181 Query 156289 GAGGAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGAC 156348 || || |||| |||||| | |||| | || | | || | ||||| | ||| Sbjct 182 GAAGAAAACGAATTCCTGCAAAGGAAGTCGCAGCTGATCCTTGAAAATTACAATGCTGAA 241 Query 156349 GACCCGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGC 156408 || ||||| ||| ||| | ||| | | | ||||| ||||||||||||| ||| Sbjct 242 GATCCGCTTAAGAAGAAGATTGCCAGCGTGTTTCTGGAAAGCTTCCTGTTCTATTCGGGC 301 Query 156409 TTCTACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATC 156468 ||||| |||||||||| ||||||| || | |||||||||||| || || ||| | || Sbjct 302 TTCTATCTGCCGATGTACTGGTCGAGCCGTGCCAAGCTCACCAATACGGCTGACCTTATT 361 Query 156469 CGGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAG 156528 || || |||||||| || || ||||| || ||||| ||||||||||| |||| ||| Sbjct 362 CGCCTTATCATCCGCGATGAAGCCGTTCATGGCTATTACATCGGCTATAAGTATCAGCGC 421 Query 156529 GGCCTGGAGAAG-GAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCT 156587 | || |||||| || || ||| | ||||| ||||||||| ||| || || Sbjct 422 GCTCTTGAGAAGCTTGATGAA-GCCAAAAAACAGGAGATCAAGGACTTTGCCTTCGATCT 480 Query 156588 GCTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGG 156647 | || | ||||| | |||||| || | || ||| | | || || || | | || Sbjct 481 GTTGCTGGAGCTTTACGACAATGAAGTGCGTTATACCGAAGCGCTATATGATGGCGTTGG 540 Query 156648 CCAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCT 156707 | |||||| || || || |||||||||| ||||| | |||||||| ||| |||||| Sbjct 541 TCTGACCGAAGATGTCAAAAAGTTCCTGCATTACAATGCAAACAAGGCGCTGATGAACCT 600 Query 156708 GGGCTACGACGCGCTGTT--CAGCCGCAGCGACTGCGACGTCAACCCGGCCATCCTGAGC 156765 || ||||| || ||||| | || | ||| |||| | ||||||||||| ||||| Sbjct 601 TGGTTACGAAGCCCTGTTTCCGGCGGAAGC--CTGCAAGGTCAACCCGGCGATCCTCTCA 658 Query 156766 GCGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTAC 156825 ||||| ||||| || ||||| ||||||||||||||||| || ||||| | || Sbjct 659 GCGCTTTCGCCGAATGCCGACGAAAACCACGACTTCTTCTCCGGTTCGGGTTCTTCCTAT 718 Query 156826 GTCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGAT 156874 || || | ||||| ||| | || ||||| || ||||||||||| |||| Sbjct 719 GTGATCGGCAAGGCTGTTGCGACAGAAGATGATGACTGGGACTTTTGAT 767 >seq1297 Length=13545 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 13080 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 13021 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 13020 CCTGCCCCCGCAAC 13007 >seq1245 Length=15834 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 15369 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 15310 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 15309 CCTGCCCCCGCAAC 15296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526577013522480