Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 >seq3 Length=15630833 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | | ||||||||||| |||||||||||| | Sbjct 4186262 CCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAC 4186203 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || || || | |||| | ||||| ||||| || || Sbjct 4186202 AAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGG 4186143 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || | | || | |||||| | | ||| || Sbjct 4186142 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACT 4186083 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || ||||| || ||||| |||||||| Sbjct 4186082 TCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 || || || || ||||| ||||||| | || | |||||||| ||||| || | || Sbjct 12047147 GACGCCGTCGCCATCGAGCAGGAGTTCCTCACCGAAGCGCTGCCCGTCGACATGATCGGA 12047088 Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 |||||| | | |||| ||||||||||||| || || |||| |||| | | || Sbjct 12047087 ATGAACTGCCGGCTGATGTCGCAGTACATCGAGTTCGTTGCCGATCATCTGCTCCAGGAG 12047028 Query 52734 CTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 ||||| || | ||| | ||||| ||||| || || || ||| | ||||| || Sbjct 12047027 CTCGGAT-GCGATAAGCTGTACAACGTCAAGAATCCATTCGACTTCATGGAGAACATCTC 12046969 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAGCG 52843 | | || || ||||||||||| |||||||| || || ||||||| |||| Sbjct 12046968 GATCGATGGAAAGACCAACTTCTTCGAGAAACGCGTTTCCGAGTATCAGCG 12046918 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | |||||||| || |||||||| ||| Sbjct 4185302 CCTCCACGGAGACGAAGAACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAA 4185243 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| || |||| |||| || | ||| ||||| || || Sbjct 4185242 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGA 4185183 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| | || | ||| | | || | |||||| | | || || Sbjct 4185182 ATTCCCTCCTTGTCT-TGAATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCTTCGAC 4185124 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||||||||| || || || |||||||| Sbjct 4185123 CTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 4185076 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | |||||||| || |||||||||||| Sbjct 1643868 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1643927 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| || |||| |||| | | || ||||| || || Sbjct 1643928 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 1643987 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | ||| |||| | ||| || Sbjct 1643988 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 1644047 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAAT 138624 |||| || | || ||||| |||||||| || || || || |||||| || | ||| Sbjct 1644048 TCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAAAT 1644104 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| | |||||| || || || |||| Sbjct 4183800 GACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCG 4183741 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| |||||| ||| | Sbjct 4183740 AAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACA 4183681 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| |||| | ||||||||| | || | ||||| || |||| ||||| Sbjct 4183680 TTCTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTTTCCTGTCAACGTTTTG 4183621 Query 138601 ACAAAAATCTGCATG 138615 || || || |||||| Sbjct 4183620 ACGAAGATTTGCATG 4183606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496242245543280