Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3 105 5e-18 >seq3 Length=15630833 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||||||||| || || ||||| |||||||| ||| | | | | |||| || Sbjct 4186245 AACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTC 4186186 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || |||||| | ||||| ||||| ||||| ||| |||||||||||||| Sbjct 4186185 GAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 4186126 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| | || || || || | || || || ||||| ||||| || Sbjct 4186125 GATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTCTT 4186066 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || ||||| || |||||| Sbjct 4186065 TCCGGTAAGAGTCTTGACAAAGATCTGCATA 4186035 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || || || || |||||||| || ||| |||| |||| || Sbjct 4183815 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCGTCCTCA 4183756 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || ||| | || | | ||| ||||| ||| |||||||||||||| Sbjct 4183755 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 4183696 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| ||| | || || |||||| | || || || | ||| || ||||| Sbjct 4183695 ATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTTT 4183636 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| ||||| || || |||||||| Sbjct 4183635 CCTGTCAACGTTTTGACGAAGATTTGCAT 4183607 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || || || || || || || |||||||| ||| |||| | | | || || Sbjct 1643885 AACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 1643944 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | ||||| | || ||||| |||||||||||||||||| Sbjct 1643945 GAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTG 1644004 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || || |||||| || || || | |||||| || || Sbjct 1644005 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTT 1644064 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 ||| |||||||| || || || |||||||| ||||| Sbjct 1644065 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAA 1644102 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || ||||| || || || |||||||||||| ||| | | | || || Sbjct 4185285 AACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTC 4185226 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | || | | ||| ||||| ||||||||| |||||||| Sbjct 4185225 GAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTG 4185166 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| ||| | || || || || | ||| || || | || ||||| || Sbjct 4185165 AATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCTT 4185106 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| || || || || ||||| Sbjct 4185105 TCCAGTCAGAGTCTTGACGAAGATCTGCAT 4185076 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || ||||| ||||||||||| ||| |||| | ||||| ||||| Sbjct 4185735 ATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGACAGAGTTCTACCATCTTCCAATTG 4185676 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | || | | |||||||| ||| ||||||||||| || || || Sbjct 4185675 CTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTT 4185616 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || |||| || || || | ||| || || | || ||||| || || || Sbjct 4185615 GGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCTTTCCAGT 4185556 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||| || || || || ||||| Sbjct 4185555 CAGAGTCTTGACGAAGATCTGCAT 4185532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357377848281965