Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 >seq3 Length=15630833 Score = 111 bits (122), Expect = 1e-19 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414 || ||||||||||| ||| |||||| || |||| || ||||||| | | ||| Sbjct 12047147 GACGCCGTCGCCATCGAGCAGGAGTTCCTCACCGAAGCGCTGCCCGTCGACATGATCGGA 12047088 Query 47415 ATGAAC-GCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA 47473 |||||| || | | ||||| |||||||||| || || ||||| | |||||| | Sbjct 12047087 ATGAACTGCCG-GCTGATGTCGCAGTACATCGAGTTCGTTGCCGATCATCTGCTCCAGGA 12047029 Query 47474 GCTAAAGTATCCCA--AGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531 ||| | || | | || | ||| || | ||||||||||||| || ||| | ||||| Sbjct 12047028 GCTC--GGATGCGATAAGCTGTACAACGTCAAGAATCCATTCGACTTCATGGAGAACATC 12046971 Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 ||| |||| || ||||||||||| |||||||| ||||| Sbjct 12046970 TCGATCGATGGAAAGACCAACTTCTTCGAGAAACGCGT 12046933 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || || || ||||| ||| | || || ||| || Sbjct 1643886 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 1643945 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||| ||| ||||||||| ||||| || || || || || |||||||| | Sbjct 1643946 AGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 1644005 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| ||| || | ||||||||||| ||| | || || Sbjct 1644006 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTA 1644065 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || |||||||| || || || || |||||| || Sbjct 1644066 CCCGTCAGAGTCTTGACGAAGATTTGCATGACT 1644098 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||||||| | || || ||| || || || ||||| Sbjct 4185272 GTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGCTTTCCG 4185213 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| |||| | || |||||| || || || || |||||||||| | ||| | | || || Sbjct 4185212 GCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGT-CTTGAATCTTGGCTTT 4185154 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | |||| |||||| | | ||||| |||| || | || || || |||||||| Sbjct 4185153 GACATTCTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCTTTCCAGTCAGAGT 4185094 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 4185093 CTTGACGAAGATCTGCAT 4185076 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || | || ||| ||| || ||||| || || Sbjct 4184542 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCCTCAAGCTGCTTCCCG 4184483 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||| |||||||| || || || || ||||||||| ||| || ||| Sbjct 4184482 GCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTG 4184423 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||||| || || || | || | || || || || |||||| Sbjct 4184422 ACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTGATAGTCTTTCCAGTAAGAGTT 4184363 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 4184362 TTCACGAAAATCTGCAT 4184346 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || |||||| |||| | || |||||| || || || || |||||||||||| ||| || Sbjct 4184944 TTACCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 4184885 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 |||| | || | |||||||| | || ||||||| ||| | ||| || |||||| Sbjct 4184884 GCTTTGACATTCTCAATGGTGTCCGAAGCTTCAACTTCGAGGGTGATCGTCTTTCCGGTC 4184825 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 | || || || || |||||||| Sbjct 4184824 AACGTCTTGACGAAGATCTGCAT 4184802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475481488723760