Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_012663.1 Length=60074 Score E Sequences producing significant alignments: (Bits) Value seq303 158 5e-34 >seq303 Length=9539 Score = 158 bits (174), Expect = 5e-34 Identities = 465/704 (66%), Gaps = 17/704 (2%) Strand=Plus/Minus Query 17778 TACGAAAATATCACAGAAACTATCGGAAACACACCACTTGTTAAATTACACCCTGTATCA 17837 ||| | ||||| || ||| |||||| | |||||| |||||||| | || | || Sbjct 8609 TACAATAATATTACTGAACTAATCGGACAAACACCAATTGTTAAACTCAACAAT--ATTG 8552 Query 17838 CTCAATGGAGATATTGCTGATGTTTATGTTAAACTAGAAAGCTTCAACCCTGGAGGTTCG 17897 || | | | | ||| || || |||||||||||||| ||| ||||| ||| ||| Sbjct 8551 TTCCAGAGGG-TGCTGCAGACGTCTATGTTAAACTAGAGGCCTTTAACCCAGGATCTTCA 8493 Query 17898 GTCAAAGACCGTATTGCTTTGAAAATGATTCAACAAGCACA-CAAGATTGGACAA-CTTA 17955 ||||||||||||||||| | | |||||| || | || | || || || || || | Sbjct 8492 GTCAAAGACCGTATTGCCCTTAGCATGATTGAAAAGGCTGAGCAGGA--GGGCATTCTAA 8435 Query 17956 AAGAAGAACAAGCTATTGTAGAACCAACCTCTGGTAATACTGGAATCGGTTTAGCTATGG 18015 || | ||||||| ||| |||| ||| ||||||||||||||| | | || Sbjct 8434 AACCCGGTGCTACTATTGTTGAAGCAACAAGTGGAAATACTGGAATCGGTCTTTCATGGG 8375 Query 18016 TTGGAGCAGCTCTTGGACATCCAGTTACTATTGTAATGCCAGAATCATTCTCTATGGAAC 18075 |||| || ||| ||| || |||| ||| || ||||||||| | | | |||||| Sbjct 8374 TTGGTGCTGCTAAAGGATATAAAGTTGTTATCGTCATGCCAGAAACGATGAGTGTGGAAC 8315 Query 18076 GTAGACAAATTATCCGTGCTTATGGTGCTAACTTAGTTTTAACACCTGCTAGTGAAGGAA 18135 | | | ||||||| || ||||| ||| | | || | ||||||| ||| ||||| | Sbjct 8314 GACGTAAGATTATCCAAGCCTATGGCGCTGAACTCGTCCTTACACCTGGTAGCGAAGGTA 8255 Query 18136 TGAAAGGTGCTATCGCTAAAGCCAAAGAAATTGCCAAAGATATTAACGGATTTATACCAA 18195 |||||||||| || || |||||| ||||||| || || || || | || Sbjct 8254 TGAAAGGTGCGATTGCCAAAGCCCAAGAAATCGCAGCTGAGCGCGGTGGTTTCCTTCCTC 8195 Query 18196 TGCAATTTGAGAACTTCTG-GAATCCTACAGCTCATTTTGATAAC-ACAGCTTTTGAAAT 18253 | |||||| | || | | | |||||| || || | ||| |||| |||||| Sbjct 8194 TACAATTTAACAA-TCCAGCTAATCCTGAAGTACA-CGAAAGAACAACAGGAGCTGAAAT 8137 Query 18254 CATTGATGAACTTACTAAAAGTGGTAAACGTCCAGATATGTTTGTAGCAGGAGTTGGAAC 18313 | | || ||| | || | | | | |||| ||||| | || ||||| || Sbjct 8136 ACTAGCTG--CTTTC----GGTTCTGATGGACTAGATGCCTTTGTGGGTGGTGTTGGTAC 8083 Query 18314 TGGTGGCACTATTACTGGAGCAGGTCATTCACTCAAAGAAGAATTTCCTAGCATTAAAAT 18373 |||||| || ||| | || | |||| |||| |||| | | | | | |||| || | Sbjct 8082 TGGTGGAACGATTTCGGGCGTTTCTCATGCACTTAAAGCTGCAAATTCAAACATTCAAGT 8023 Query 18374 TGTTGGAGTTGAATCAGCAGAATCACCAGTACTTAGTGGAGGAGAACCTGGACCACATAA 18433 | || |||||| ||| || ||| | | | ||| | | |||| || || ||||| Sbjct 8022 TTATGCAGTTGAGGCAGACGAGTCAGCTATCTTGTCTGGTGAAAAACCAGGGCCTCATAA 7963 Query 18434 GATTCAAGGTATTTCAGCAGGTTTTATTCCACAAATTCTTGATA 18477 |||||||| || ||||| || |||||||| ||| ||||||| Sbjct 7962 AATTCAAGGCATCTCAGCTGGATTTATTCCTGAAACACTTGATA 7919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192107787835368