Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq2112 127 8e-25 seq109 82.4 3e-11 >seq2112 Length=10038 Score = 127 bits (140), Expect = 8e-25 Identities = 168/230 (73%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 9121 TCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGA 9180 |||||||||||||||| |||||||| |||||| ||||||||| ||| || || Sbjct 9326 TCAACAAAGTCATCCTGGTCGGCAACCTCGGCAACGACCCGGACGTGAAGTACACCCAGA 9267 Query 9181 GCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCG-CTACAAGGACAAGGCG 9239 ||||| || ||| || ||| | || || || ||| | || | ||||||||||| Sbjct 9266 GCGGCATGGCGATCACCCGCATCAGCCTGGCCACCACC-AGCGTCCGCAAGGACAAGGAT 9208 Query 9240 AGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTCGGCCGCCTCGCC 9299 || | || ||||| ||||| ||||||||||| | ||||||||| |||| | Sbjct 9207 GGCAACCAGC---AGGAACGTACCGAATGGCACCGCGTGGTGTTCTTCGGCAAGCTCGGC 9151 Query 9300 GAGATCGTCGACGAGCACCTTCGCAAGGGCGCATCGGTCTACATCGAGGG 9349 ||||||| || |||| |||| ||||||||| ||||||||| |||| || Sbjct 9150 GAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGG 9101 >seq109 Length=3239 Score = 82.4 bits (90), Expect = 3e-11 Identities = 77/96 (80%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 9109 GCATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCC 9168 |||||||||| || ||||||||||| ||||| |||||||| || |||||||||| || Sbjct 124 GCATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGACGCGACCCGGAAGTCC 65 Query 9169 GCTAC--CTCCCGAGCGGCGACGCAATCTCCAATAT 9202 ||||| | || || |||| ||||||| |||||| Sbjct 64 GCTACAGCCCCGAAGGGGCG--GCAATCTGCAATAT 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200555258261364