Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq1878 105 2e-18 seq1569 82.4 2e-11 >seq1878 Length=10347 Score = 105 bits (116), Expect = 2e-18 Identities = 356/556 (64%), Gaps = 14/556 (3%) Strand=Plus/Plus Query 29634 GATCACGGAGGTGATTGACCGCAAGCTGCGGTATCCGATGACAGCGCTCGTCGGCATGAC 29693 ||| |||||||| || ||| |||||| |||| |||||| | || || |||||||| | Sbjct 9622 GATTACGGAGGTAATAGACGCCAAGCTTAGGTACCCGATGTCTGCTCTGGTCGGCATCAG 9681 Query 29694 GTTTGACGCGCGATCGTTCTCGCAGGTGCCGGTGCGGTCGTACCACGTTCGCGGCCTGAT 29753 | |||| || |||| | || | ||| || || || || | || Sbjct 9682 GATTGATGCCTCCCAGTTCCAATCAATACCCGCGCGATCCTATGACTGGAAGGGACGAAT 9741 Query 29754 CATTCGGGTGCCGTCGAACTACGATCCCGA--GACGCGCACGTACTCGGGGGCATGGGAC 29811 ||| || || ||||||||||| || || | |||||| ||| |||| | |||||| Sbjct 9742 CATCCGCGTCCCGTCGAACTATGACGAGGATCGTCGCGCA--TACGCGGGAACCTGGGAC 9799 Query 29812 GGGACGTTCAAGCCGGCGTNNNNNNNNNNNNNNNNNNNNNTTTTCTACGACCTGCTGCTG 29871 || || ||||||| |||| ||||||| ||||| || Sbjct 9800 GGAACTTTCAAGCTTGCGTGGACTGACAACCCTGCGTGGATTTTCTATGACCTCGTGACC 9859 Query 29872 AACGATCGCTACGGCCTCGGCAAGACGGTCGACGCGTCGAT--GATCGACAAGTGGGGGC 29929 || ||||| || ||||| || || | || | || | | | || ||||||||| Sbjct 9860 AATGATCGGTATGGCCTGGGTGAGCGCAT--ACCCTCCGGTTGGTTGGATAAGTGGGGGT 9917 Query 29930 TGTACGAAATTGCGCGGTATTGCGACGTCATGGTGTCGGACGGCAGAGGCGGCGTTGAAC 29989 |||| | || || ||||| ||||| | | ||| | || || ||||| || | Sbjct 9918 TGTATCAGATAGCCCGGTACTGCGATGAACTAGTGCCCGATGGATTTGGCGGGCAAGAGC 9977 Query 29990 CGCGCTTCACGTGCAACTGCGTGATCCAGTCGGCCGCCGACGCGTACAAGGTGCTGCAAG 30049 | |||||||| ||||||||| | ||| | ||||| |||||||| ||| |||| | Sbjct 9978 CACGCTTCACCTGCAACTGCTATTTGCAGACAGCCGCGGACGCGTATCGGGTTTTGCAGG 10037 Query 30050 ATATTGCCAGCGTGTTCCGCGGCATTTCGTACTGGGGGCCGGGTGCGGTAGTCGCTTCCG 30109 | | || |||||||| || || ||||||||| || | || |||| | ||| Sbjct 10038 ACCTGGCGTCGGTGTTCCGGGGAATGACGTACTGGG---CGAATTCGTCAGTCTTTGCCG 10094 Query 30110 ---CGGACATGCCTTCCGATCCGGTCTACGTTTACACCGCGGCGAACGTGATCGACGGGG 30166 | || ||||| |||||| ||||| | ||| |||| |||||||||||||| Sbjct 10095 TCGCAGATATGCCCGGCGATCCCGTCTATACCTTCACGTCGGCCAACGTGATCGACGGCC 10154 Query 30167 CATTTCGCTACGTAGG 30182 |||| ||||| || Sbjct 10155 GATTTAATTACGTCGG 10170 >seq1569 Length=16112 Score = 82.4 bits (90), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 8881 AAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGC 8940 ||||||||| | ||||||||||||||||| || |||||| || | | || | || Sbjct 3674 AAGGAACTCAATGTTCCGATCATCGCGCTATCACAGCTTTCGCGTCAGGTGGAAAGCCGT 3615 Query 8941 CCAAACAAGCGGCCCGTCA--TGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATG 8998 ||||||| || ||| | |||||||| || || |||||| ||||||||||||| | Sbjct 3614 GACGACAAGCGCCC--TCAGCTCTCCGATCTTCGTGAATCGGGTTCGATCGAGCAGGACG 3557 Query 8999 CCGACGTGATCCTCTT 9014 | |||||| | || || Sbjct 3556 CAGACGTGGTACTTTT 3541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127540679051604