Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 159 4e-34 >seq3 Length=15630833 Score = 159 bits (176), Expect = 4e-34 Identities = 308/446 (69%), Gaps = 10/446 (2%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || |||||||| |||| |||||| | || | |||||||||| | Sbjct 10144659 GTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGC 10144600 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 || | |||| | ||||| || ||| | |||||||||||||||||| ||| Sbjct 10144599 GGCGTAGCTTGGCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCC 10144540 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 ||||| || ||||| || || | |||||| ||| ||||| ||||| ||| || Sbjct 10144539 ACGATCGGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAG 10144480 Query 115743 GTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATAGAGCCACCTGCCTTGACCA 115801 | ||| || || ||||| || ||| || |||||||||| || ||| || ||| | | Sbjct 10144479 TTCCTTGATGTCGTCTGGAAT-TCCTGGAATATTTTGGATGGATCCAT-TG--TTGGCGA 10144424 Query 115802 TGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGT 115858 ||||| | |||||| || | ||||| | || ||| ||||||| || | || Sbjct 10144423 TGAGACGATTCTTCATGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGT 10144364 Query 115859 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTG 115917 | |||||| | || ||||| | ||| || | ||| |||||||| | ||| Sbjct 10144363 GTGGATTGACGATTTGGAAGTCACCGGAGAGCACACGACG-AGAGTAGATGTTAGAAGTG 10144305 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 |||||||||| | || ||||| || | ||| || || ||||| || || ||||| || Sbjct 10144304 TATGGCTCAATCGATTCGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGA 10144245 Query 115978 GCCATGAGAAGGCTGTTGCGGAGACC 116003 |||||||| || |||||||| | ||| Sbjct 10144244 GCCATGAGGAGACTGTTGCGAACACC 10144219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613482283938840