Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 1e-11 >seq3 Length=15630833 Score = 86.0 bits (94), Expect = 1e-11 Identities = 204/305 (67%), Gaps = 9/305 (3%) Strand=Plus/Plus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTC 159709 |||||||| ||||||||||| || || || || || |||||||| ||||||| ||| Sbjct 12046939 TTCTCGAAGAAGTTGGTCTTTCCATCGATCGAGATGTTCTCCATGAAGTCGAATGGATTC 12046998 Query 159710 TTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCG 159769 || |||| || |||| ||||||| || |||| || || || || ||| Sbjct 12046999 TTGACGTTGTACAGCTTATCGCATCCGAGCTCCTGGAGCAGATGATCGGCAACGAACTCG 12047058 Query 159770 ATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| || | ||||| || ||||| || || | || ||||| |||||||| | Sbjct 12047059 ATGTA-CTGCGACATCAGCCGGCAGTTCATTCCGATCATGTCGACGGGCAGCGCTTCGGT 12047117 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || ||||||| ||| || |||| || || | | |||| ||| || || | | Sbjct 12047118 GAGGAACTCCTGCTCGATGGCGACGGCGTCTCTGATGATCTCGAAGATGCGCTCTTGGCT 12047177 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAA--ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 | ||||| || | || | | |||||||| || ||||||| |||||| || Sbjct 12047178 CAGCTTGTTTTGAA-----GCATTGAGTAGAGGAGGCAAGCGAAGTCGCGGTGCAGGCCT 12047232 Query 159947 TCGTC 159951 ||||| Sbjct 12047233 TCGTC 12047237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795122906759440