Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3 147 5e-30 >seq3 Length=15630833 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| ||||| |||||||||||||||| |||||| || | || ||| || |||||| Sbjct 4185743 AGGACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGACAGAGTTCTACCATCT 4185684 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| |||||||||||||| | || ||||| || |||||||| ||| Sbjct 4185683 TCCAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCC 4185624 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||||| |||||| | | ||| || || | ||||| ||| Sbjct 4185623 TGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTC 4185564 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || || || Sbjct 4185563 TTTCCAGTCAGAGTCTTGACGAAGATCTG 4185535 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| |||||||| |||| ||||||||| | | ||| |||||||| ||||||||| Sbjct 4184776 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCCAGCTGC 4184717 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||||||||||||||| | |||||| || || ||||| || || || ||||| Sbjct 4184716 TTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTG 4184657 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || |||| ||||| | | ||| || ||||| ||||| ||||| || ||| Sbjct 4184656 GCTTTGACATTCTCGATTGTGTCAGAAGCTTCCACTTCCAAAGTGATGGTCTTTCCGGTG 4184597 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| Sbjct 4184596 AGGGTCTTGACGAAGATTTG 4184577 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || || |||||||||||||||| ||||||||| | |||||| Sbjct 4186256 CGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTG 4186197 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || ||||||||||| |||||||| | ||||||||||| || |||||| Sbjct 4186196 CGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCT 4186137 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||| || |||| |||||| | | || || ||||| Sbjct 4186136 TCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACTTCCAAG 4186077 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || ||||| || || Sbjct 4186076 GTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTG 4186039 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| |||||||| |||| |||||| || | | ||| | |||||| Sbjct 4185287 AGAACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGTCCATCC 4185228 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||||||||||||||| | ||||||||| || |||||| || || Sbjct 4185227 TCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT 4185168 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || || |||| |||||| | | ||| || || | ||||| ||| Sbjct 4185167 TGAATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTC 4185108 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || || || Sbjct 4185107 TTTCCAGTCAGAGTCTTGACGAAGATCTG 4185079 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| |||||||| |||| ||||||||| | | ||| Sbjct 1643874 CGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTA 1643933 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || ||||||||||||||||| | | |||||||| || ||||||| Sbjct 1643934 CGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCT 1643993 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || |||| ||| || | | || || || | Sbjct 1643994 TCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGG 1644053 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||||||||| ||||| || || || ||||| Sbjct 1644054 GTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTG 1644091 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| ||||| |||||||| |||| ||||||||| | | || Sbjct 4184566 CGAAGACGAAGAACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTA 4184507 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||| | | ||||| || || ||||||| Sbjct 4184506 CGACCATCCTCAAGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCT 4184447 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| || ||| ||| | ||||| | | ||| || || | Sbjct 4184446 TCCTTGTCCTGGATCTTGGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGA 4184387 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||||||||| ||||| || Sbjct 4184386 GTGATAGTCTTTCCAGTAAGAGTTTTCACGAAAATCTG 4184349 Score = 120 bits (132), Expect = 7e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||| |||||||| |||| ||||||||| | | ||| ||||| || Sbjct 4183818 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCGTCC 4183759 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||| | ||||||||| || |||||||| || Sbjct 4183758 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 4183699 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || |||| ||| || | | || || |||| ||||| || Sbjct 4183698 TGGAT-TTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGT 4183640 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| || || ||||| Sbjct 4183639 TTTTCCTGTCAACGTTTTGACGAAGATTTG 4183610 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||| ||||| |||| ||||||||| | | || | |||||| Sbjct 4184046 AGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCC 4183987 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||| | |||||| || || ||||| || || Sbjct 4183986 TCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCT 4183927 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || || | ||| || | | || || ||||| ||||| ||| Sbjct 4183926 TGAATCTTGGCCTTGACATTCTCAATGGTATCGGAAGCCTCGACCTCCAAAGTGATGGTC 4183867 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || ||||| Sbjct 4183866 TTTCCAGTGAGTGTCTTGACGAAGATTTG 4183838 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||| |||||||| |||| ||||||||| | ||| || | |||||| Sbjct 4185515 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCC 4185456 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| |||||||| | || ||||| || || |||||||| || Sbjct 4185455 TCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCGGGATTCCTTCCTTGTCT 4185396 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || || | |||||| | | ||| || ||||| ||||| || Sbjct 4185395 TGGAT-TTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGT 4185337 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || || || || || Sbjct 4185336 CTTTCCGGTAAGCGTCTTGACGAAGATCTG 4185307 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||||||||| ||||| ||||||||||| || ||| || | ||||||||| Sbjct 4185653 AAAGACTCATCTTCGCCGGGAAGCAATTGGAAGATGGTAGAACTCTGTCGGATTACAACA 4185712 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGT 201017 |||| || ||||| || || || ||||| Sbjct 4185713 TCCAAAAGGAGTCGACGCTCCATCTTGT 4185740 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||||||||||||||| | || |||||| | ||| | ||||||||||| |||| Sbjct 4185201 ACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAACATCCA 4185260 Query 200994 GAAAGAGTCTACTCTTCACCTTGTT 201018 ||| ||||||||||| || || ||| Sbjct 4185261 GAAGGAGTCTACTCTCCATCTCGTT 4185285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178872524072683