Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 125 8e-24 >seq3 Length=15630833 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| | |||||| |||| ||||||||||| || ||||| Sbjct 4186227 CTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAA 4186168 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | | |||||||| ||| || ||||| | Sbjct 4186167 GATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATT 4186108 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | || || |||| |||||||| || || || || || || || Sbjct 4186107 CTCGATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGAC 4186048 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 4186047 AAAGATCTGCAT 4186036 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||||| || | || |||||| ||||| |||||||| || Sbjct 4183833 CCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 4183774 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| || |||||||| |||||||| || | | ||||||||| | || Sbjct 4183773 AGAGTTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 4183714 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||| || |||| || | | || ||| | ||||| Sbjct 4183713 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACC 4183654 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| || |||| |||||| || ||||||||||| Sbjct 4183653 TCCAGGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4183607 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||||| ||| | || |||||| ||||| |||||||| || Sbjct 4184800 CCTCCTCTGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 4184741 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || |||||||| |||||||| || | | |||||| || | || Sbjct 4184740 AGAGTTCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 4184681 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| |||| || | | ||||| | |||||| Sbjct 4184680 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATTGTGTCAGAAGCTTCCACT 4184621 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || || || || || || ||||||||||| Sbjct 4184620 TCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 4184574 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || ||||| ||||| |||||||| Sbjct 1643903 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAA 1643962 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||||| | || | | |||||||| |||||| ||||| | Sbjct 1643963 GATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATT 1644022 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || || | || || || || |||||||| || || || Sbjct 1644023 CTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGAC 1644082 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 1644083 GAAGATTTGCAT 1644094 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||||| || | || |||||| ||||| ||||||||||| Sbjct 4185530 CCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4185471 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || |||||||| || ||||| ||||| || ||||| || | ||| Sbjct 4185470 AAGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCGGG 4185411 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||| || |||| || | | ||||| | ||| || Sbjct 4185410 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACT 4185351 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || || ||||| || || ||||| ||||| Sbjct 4185350 TCCAAAGTGATGGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || || || | || || |||||||| |||||||| Sbjct 4184025 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCCTCAAGCTGCTTTCCGGCGAAG 4183966 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | |||||| || | || | | ||||||||| ||||| ||||| || Sbjct 4183965 ATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTGACATTC 4183906 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| | || || |||| |||||||| || || || || || || || Sbjct 4183905 TCAATGGTATCGGAAGCCTCGACCTCCAAAGTGATGGTCTTTCCAGTGAGTGTCTTGACG 4183846 Query 46583 AAGATTTGCATT 46594 |||||||||||| Sbjct 4183845 AAGATTTGCATT 4183834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565215444255480