Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 154 1e-32 >seq3 Length=15630833 Score = 154 bits (170), Expect = 1e-32 Identities = 252/359 (70%), Gaps = 8/359 (2%) Strand=Plus/Plus Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAG--TCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981 ||| || || || |||||| ||| | |||| || ||||| || ||||| || |||||| Sbjct 12047863 CCTCGAGATAAGCTCGTTG--GAATGGGTCAATCCTGGCATCAGACCGCGCTTCTTGAGC 12047920 Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 || || || | ||||| ||| ||||||| |||||| ||||| ||||| || | Sbjct 12047921 CAGAAAATCGACGCGAACGAGCCGCTGAAGAAGATGCCCTCAACGGCAGCGAACGCGATG 12047980 Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTT 133101 || |||||| |||||| || | || || ||||| || |||||||| ||||||||| Sbjct 12047981 AGCCGCTCGGCGAACGATGCCTTGGTGTCGGAAATCCAACGAAGCGCCCAGTCGGCCTTT 12048040 Query 133102 TCTTTGACGCA--CGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGG 133159 | |||| | | || ||| ||||||||| |||| | ||| | | | Sbjct 12048041 TTCTTGATGAATTCGAACTCGAA--GATGGCGTTGAACAGCTTCATGCGCTCCTTCTCGT 12048098 Query 133160 AACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGA 133219 || | || || |||||||| |||| ||||| |||||||||| |||||| ||||||| Sbjct 12048099 CGCGGATATACGTCTCGATGAGCTTCGAGTACATCTCCGAGTGTATGTTCTCGATGGCGA 12048158 Query 133220 TTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278 |||| || ||||| ||| | |||||||| |||| ||||| | | ||| || ||| Sbjct 12048159 TTTGGAATCCGTAGAAGAAGCGCGCCTCAGAGACCTTGACTTCGTTCGAGAAGCGTTCG 12048217 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| |||||| | || || ||||| |||||| | || || ||||| || Sbjct 4183607 ATGCAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCCTGGAGGTGGAGGCTTCC 4183666 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | |||| ||||||| ||||| || ||||| || | ||||| Sbjct 4183667 GATACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 4183726 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | ||||| | ||| || || ||||| || |||| | || || ||||||||| Sbjct 4183727 CAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGACGGAAGAACTCTTTCGGACTACAAC 4183786 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || |||||||| ||| | ||||| || Sbjct 4183787 ATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTCAGAGGAGG 4183833 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| || || |||||||| | || |||||||| | Sbjct 4183834 AATGCAAATCTTCGTCAAGACACTCACTGGAAAGACCATCACTTTGGAGGTCGAGGCTTC 4183893 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | | | | || | || || | ||||| |||||||| || | || || Sbjct 4183894 CGATACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCA 4183953 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | ||| || || ||||| || || | || |||||| |||||||| Sbjct 4183954 GCAGAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAA 4184013 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| |||| || || ||||| || || | ||||| || Sbjct 4184014 CATCCAGAAGGAATCGACTCTTCACTTGGTTCTCCGCCTCAGAGGAGG 4184061 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || |||||||| | || || || || | Sbjct 4184574 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTTTGGAAGTGGAAGCTTCT 4184633 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| ||||| |||||||| || | || || Sbjct 4184634 GACACAATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAG 4184693 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | ||||| | ||| || || |||||||| || | | || || ||||||||| Sbjct 4184694 CAGAGACTCATCTTCGCCGGAAAGCAGCTGGAGGATGGAAGAACTCTTTCGGACTACAAC 4184753 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||||||||||| ||| | ||||| || Sbjct 4184754 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTCTCAGAGGAGG 4184800 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || |||||||| | || ||||| || | Sbjct 4185304 ATGCAGATCTTCGTCAAGACGCTTACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCG 4185363 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | |||| ||||||| ||||| || ||||| |||||| || || Sbjct 4185364 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAAT-CCCGCCAGATCA 4185422 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || || ||||| || || | || ||| | ||||||||| Sbjct 4185423 GCAACGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACCTTGTCCGACTACAA 4185482 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || |||||||| ||| | ||||| || Sbjct 4185483 CATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTCAGAGGAGG 4185530 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| | || |||||||| | Sbjct 4186036 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATCACCTTGGAAGTCGAGGCTTCT 4186095 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| ||||| || ||||| || | ||||| Sbjct 4186096 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 4186155 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| || || ||||| || |||| ||||| | |||||||||| Sbjct 4186156 CAGCGCTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACTTTGTCCGACTACAAC 4186215 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| |||| || ||| | || || ||| Sbjct 4186216 ATCCAAAAGGAGTCGACCCTTCATCTCGTTCTCCGT 4186251 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| || || || ||| |||| ||||||||| || Sbjct 1644094 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCC 1644035 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| || |||||||| | ||||| Sbjct 1644034 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 1643975 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || || || || || || | || || ||| |||||||||| Sbjct 1643974 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 1643915 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || || ||||| || ||| Sbjct 1643914 ATCCAGAAGGAGTCCACTCTCCACTTGGTTCTCCGT 1643879 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || || |||||||| |||| ||||| || | Sbjct 4185531 AATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTC 4185590 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| |||| | || |||| || || || ||||| || | |||| Sbjct 4185591 TGACACCATCGAAAACG-TTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACC 4185649 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| | ||||| | ||| || || || |||| || | | || || || |||| Sbjct 4185650 AACAAAGACTCATCTTCGCCGGGAAGCAATTGGAAGATGGTAGAACTCTGTCGGATTACA 4185709 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| ||||||| ||| | || || ||| Sbjct 4185710 ACATCCAAAAGGAGTCGACGCTCCATCTTGTCCTTCGT 4185747 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || || |||||||| |||| ||||| || | Sbjct 4185075 AATGCAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTCGAAGCTTC 4185134 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | |||| || || | ||||| ||||||||||| | ||||| Sbjct 4185135 TGACACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCA 4185194 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | ||| || || || || || || | || || || ||| ||||| Sbjct 4185195 GCAGAGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAA 4185254 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || ||| | || || ||| Sbjct 4185255 CATCCAGAAGGAGTCTACTCTCCATCTCGTTCTTCGT 4185291 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCA-GACGCAC 132788 ||||| |||||||||||||| |||||||| ||| || | ||| | || | || || Sbjct 12047044 TCGGCAACGAACTCGATGTACTGCGACATCAGCCGGCAGTTCATTCCGATCATGTCG-AC 12047102 Query 132789 CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCT 132848 ||||||||||||||||| || |||||||||||||| ||||| ||| ||| || Sbjct 12047103 GGGCAGCGCTTCGGTGAGGAACTCCTGCTCGATGGCGACGGCGTCTCTGATGATCTCGAA 12047162 Query 132849 AACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA--ACATCAAGCAAGCAAAGTCG 132906 | |||| | |||| || ||| || |||| | | | |||||| |||||| Sbjct 12047163 GATGCGCTCTTGGCTCAGC--TTGTTTTGAAGCATTGAGTAGAGGAGGCAAGCGAAGTCG 12047220 Query 132907 CAATGCAAGCCCTCGTCCCTGGAAA 132931 | |||| ||| ||||| ||||||| Sbjct 12047221 CGGTGCAGGCCTTCGTCTCTGGAAA 12047245 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| || || || || || ||||| | || || || ||| | Sbjct 4184345 AATGCAGATTTTCGTGAAAACTCTTACTGGAAAGACTATCACTCTAGAGGTTGAAGCCTC 4184404 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| || |||| ||||| || |||||||| | || | Sbjct 4184405 GGACACTATTGAAAACG-TCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATC 4184463 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || | | || | ||| || || ||||| || || | || |||||| ||||||| Sbjct 4184464 AGCAAAGATTGATCTTCGCCGGGAAGCAGCTTGAGGATGGTCGTACCCTCTCGGACTACA 4184523 Query 38422 ACATCCAAAAGGA 38434 ||||||| ||||| Sbjct 4184524 ACATCCAGAAGGA 4184536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500152486732160