Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq2875 104 9e-18 >seq2875 Length=2430 Score = 104 bits (114), Expect = 9e-18 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 53315 CAGACGCTTGCGCAG--GCGCAGCAGATCGCCGATCTGCCTTTCGTTTATCCGCATGTGG 53372 ||| ||| || |||| ||||| || |||||| | || ||||| ||| |||| Sbjct 544 CAGGCGCATGAGCAGCTGCGCAACA--TCGCCGCGATCCCGTTCGTCGGGCCGTGGGTGG 601 Query 53373 CGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATCCCGACCG 53432 | ||||||| || | ||| | || |||||| | || ||| ||||||||||||| Sbjct 602 CCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACCGTGGGCTCGGTGATCCCGACGC 661 Query 53433 AGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGCTGCGGCATGATCGCAGCCC 53492 ||||||| | |||||||| || ||||||||||| || |||||||||||| ||| | | Sbjct 662 AGGGCGCGATCATCCCGGCCGCGGTCGGCGTCGACATCGGCTGCGGCATGGCCGCGGTGC 721 Query 53493 GCACCACG 53500 |||| ||| Sbjct 722 GCACTACG 729 Score = 86.0 bits (94), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 53696 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 53755 ||||| || ||||||||||||||||| ||||||||||| |||||||| ||| | ||| Sbjct 934 CAGCTGGGTACGCTGGGCGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACGGAC 993 Query 53756 CGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCG 53807 |||||| || | |||||| ||| || || ||| ||| ||| ||||| Sbjct 994 ACGGTGTGGGTGATGCTGCACAGCGGATCACGCGGCACCGGCAACCTGATCG 1045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190584646603280