Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq2875 86.0 2e-12 >seq2875 Length=2430 Score = 86.0 bits (94), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 54408 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 54467 ||||| || ||||||||||||||||| ||||||||||| |||||||| ||| | ||| Sbjct 934 CAGCTGGGTACGCTGGGCGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACGGAC 993 Query 54468 CGGGTGTGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGATCG 54519 ||||||| || | |||||| ||| || || || ||| ||| ||||| Sbjct 994 ACGGTGTGGGTGATGCTGCACAGCGGATCACGCGGCACCGGCAACCTGATCG 1045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191224621910880