Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 >seq3 Length=15630833 Score = 114 bits (126), Expect = 2e-20 Identities = 222/327 (68%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 110103 ATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGC 110162 ||| || || || || || |||||||| || || ||||| |||||| ||| ||||| Sbjct 10143927 ATCAGCGAGTCCTTGGACTCCGAGACCGATTGGACGATGGCGCATGTTCGAGTTGCGAGC 10143868 Query 110163 AGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTT 110222 ||| || || || ||||| ||||| | | || |||||||| || | ||| Sbjct 10143867 CTCTTCAACTGGATAGTAGTTGACATCGATTATCTTGTTCAGATTCTTTGTTATGACCTT 10143808 Query 110223 CGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGG 110282 || | ||| ||| ||| | |||||||| ||| | || || | || | | Sbjct 10143807 GGTAACCTCAGCGAGCTTGACAAAATCGAAC---TTCTTGTCGTTTGTCACGAAACGGTT 10143751 Query 110283 GAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAAT 110342 | |||||| || || |||||||| |||| | ||| ||| | | ||| || | ||| Sbjct 10143750 CAAAGCAATGGATGCGAGATTGCAAACAGCAACCTCATCTGGAGCAGAGTACTCGATAAT 10143691 Query 110343 TTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTT 110402 ||||| ||||||||||| | ||| ||| |||||||||| ||| ||||| ||| || Sbjct 10143690 CTCCGTGCACAAGTTGGAGCACTTGATGGTTCCCAAGTTCTGCTGGTTCGACTTGCGATT 10143631 Query 110403 GCATGCATCCTTATAGAGCATGTATGG 110429 | |||||||| ||| |||||||| Sbjct 10143630 GGCGGCATCCTTGTAGGTGATGTATGG 10143604 Score = 113 bits (124), Expect = 5e-20 Identities = 296/445 (67%), Gaps = 10/445 (2%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || ||||| || ||||||| |||| | |||||||| | || | Sbjct 10144658 TAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGCG 10144599 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | | || | |||| | ||| | ||| || || |||||||||||| ||| Sbjct 10144598 GCGTAGCTTGGCTTGGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCCA 10144539 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 ||||| || ||||| ||||| || ||| || || ||||||||||| ||| | Sbjct 10144538 CGATCGGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAGT 10144479 Query 109594 TTCTTGATATCATCGGGAATGTCCACGA-TGTTTTGAATAGAGCCACCAGCCTTCACCAT 109652 | |||||| || || ||||| ||| || | ||||| || || ||| || | || Sbjct 10144478 TCCTTGATGTCGTCTGGAAT-TCCTGGAATATTTTGGATGGATCCATTG---TTGGCGAT 10144423 Query 109653 GAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT-CAACAAGAT 109708 |||| | |||||| || | ||||| | || || ||||| | || || | | Sbjct 10144422 GAGACGATTCTTCATGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATG-T 10144364 Query 109709 GCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGT 109768 | ||||| | || ||||| | || || || ||||||||||| |||| Sbjct 10144363 GTGGATTGACGATTTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTAGAAGTGT 10144304 Query 109769 AGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAG 109828 | || || | | || ||||| || ||||| || ||||||||||| || ||||| |||| Sbjct 10144303 ATGGCTCAATCGATTCGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAG 10144244 Query 109829 CCATGAGAAGACTGTTTCGGAGACC 109853 ||||||| |||||||| || | ||| Sbjct 10144243 CCATGAGGAGACTGTTGCGAACACC 10144219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588952080212200