Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 9e-11 >seq1 Length=16658584 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/173 (71%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 155044 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 155103 ||||| | ||||| ||||||||||||||||| | |||||| ||| | ||||| || Sbjct 6116590 TATGGAAGAGTTGCTCCACGATCCGGTCTCGCAGCCAAGCATTTCATTGATGTTGGGGCT 6116531 Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAA--TCACGGAG 155161 |||||| ||||| || || || || |||| ||| |||| ||||| ||| | Sbjct 6116530 GGTGTTGTTGATAGTGATTACCGTGGAGAGATCAAGGTCCTTCTTTTCAACTTCAACAAT 6116471 Query 155162 ACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 155214 || ||||| ||||| ||||| || || | || ||||| || ||| |||| Sbjct 6116470 AC--TGACTTCGAGGTCAAGAAGGGTGACAGAATTGCACAGCTCGTCTGTGAG 6116420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589956839404760