Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 >seq2 Length=17838644 Score = 111 bits (122), Expect = 2e-19 Identities = 256/384 (67%), Gaps = 4/384 (1%) Strand=Plus/Minus Query 154723 TGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAG 154782 |||| ||| || || |||||||| || || ||| ||| ||||| ||||||| Sbjct 9974478 TGATTCCAACATCTGCTCATGGAACCAACCCAGCTTCGGCTCAAATGGCTAATATGAAAG 9974419 Query 154783 TTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAG 154842 | || | ||| | | |||| || | || ||||| || |||||| | | || | Sbjct 9974418 TGGTCGTTGTAGATTCTGATCATCACGGAAACATCAACTATAAAGATTTGGCAGCTAAGG 9974359 Query 154843 CAATCATGAATACATT--TGAACTGTCATGTATTATGATTACATACCCATCTACACATGG 154900 | | | | ||| | | ||||| | ||| ||| | || || ||||||||||| || Sbjct 9974358 C--TGAGAAGTACTCTAATCAACTGGCTGCTATCATGGTCACCTATCCATCTACACACGG 9974301 Query 154901 TGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGT 154960 || || ||| | ||| | | | ||| | | |||||||| | || ||||| || Sbjct 9974300 AGTCTTCGAATCATCAATTCGTGATGTTTGTGACAAGGTTCATGAGCACGGAGGTCAAGT 9974241 Query 154961 ATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGG 155020 ||| | |||||||| ||| | ||||| || || ||| | ||| | || || || Sbjct 9974240 TTATTTGGATGGAGCCAATATGAATGCTCAAGTCGGATTGTGTCGTCCAGGAGATTACGG 9974181 Query 155021 TGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGG 155080 | ||||| | ||||| ||||| || || ||||||||||||||||| ||||| || || Sbjct 9974180 TAGTGATGTGTCACATCTCAACTTGCACAAGACATTCTGTATTCCACACGGAGGAGGTGG 9974121 Query 155081 TCCTGGCGTAGGTCCTATAGGTGT 155104 ||| || || || || || || || Sbjct 9974120 TCCAGGAGTTGGACCAATTGGAGT 9974097 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 153906 GCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACA 153965 || || || ||| | || || ||||| | | |||||||| |||||||||||||| || Sbjct 9975718 GCTCTCCAAACTCGTGAACAACATATTCGTCGTGACAAAGCCACCAGTAACATCTGTACC 9975659 Query 153966 GCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGG 154015 || || || || ||||| |||||||||| | | ||||||| ||| ||||| Sbjct 9975658 GCCCAAGCCCTTCTGGCCAATATGTCTGCAATGTATGCAGTATACCATGG 9975609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579189276720160