Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-22 >seq2 Length=17838644 Score = 120 bits (132), Expect = 4e-22 Identities = 258/384 (67%), Gaps = 4/384 (1%) Strand=Plus/Minus Query 159398 TGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAG 159457 |||| ||| || || |||||||| || || || || || ||||| ||||||| Sbjct 9974478 TGATTCCAACATCTGCTCATGGAACCAACCCAGCTTCGGCTCAAATGGCTAATATGAAAG 9974419 Query 159458 TTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAG 159517 | || | ||| | | |||| || | || ||||| || |||||| | | || | Sbjct 9974418 TGGTCGTTGTAGATTCTGATCATCACGGAAACATCAACTATAAAGATTTGGCAGCTAAGG 9974359 Query 159518 CAATCATGAATACATT--TGAACTGTCATGTATTATGATTACATATCCATCTACACATGG 159575 | | | | ||| | | ||||| | ||| ||| | || |||||||||||||| || Sbjct 9974358 C--TGAGAAGTACTCTAATCAACTGGCTGCTATCATGGTCACCTATCCATCTACACACGG 9974301 Query 159576 TGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGT 159635 || || ||| || || | | | ||| | | ||||||||| | || ||||| || Sbjct 9974300 AGTCTTCGAATCATCAATTCGTGATGTTTGTGACAAGGTTCATGAGCACGGAGGTCAAGT 9974241 Query 159636 ATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGG 159695 ||| | ||||| || ||| | ||||| || || || | ||| | || || || Sbjct 9974240 TTATTTGGATGGAGCCAATATGAATGCTCAAGTCGGATTGTGTCGTCCAGGAGATTACGG 9974181 Query 159696 TGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGG 159755 | ||||| | ||||| ||||| || |||||||||||||||||||| ||||| || || Sbjct 9974180 TAGTGATGTGTCACATCTCAACTTGCACAAGACATTCTGTATTCCACACGGAGGAGGTGG 9974121 Query 159756 TCCTGGCGTAGGTCCTATTGGTGT 159779 ||| || || || || ||||| || Sbjct 9974120 TCCAGGAGTTGGACCAATTGGAGT 9974097 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 158581 GCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACA 158640 || || || ||| | || || ||||| | | |||||||| |||||||||||||| || Sbjct 9975718 GCTCTCCAAACTCGTGAACAACATATTCGTCGTGACAAAGCCACCAGTAACATCTGTACC 9975659 Query 158641 GCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGG 158690 || ||||| || ||||| |||||||||| | ||||||| ||| ||||| Sbjct 9975658 GCCCAAGCCCTTCTGGCCAATATGTCTGCAATGTATGCAGTATACCATGG 9975609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588027317770640