Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 170 4e-37 >seq3 Length=15630833 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || | ||| ||||||||||| || || || ||||| || | |||||| Sbjct 4183828 TCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGT 4183769 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || || || |||||||| || |||||||| |||| || |||||||| || || || Sbjct 4183768 TCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCC 4183709 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| ||||| ||||| ||||| ||||| || ||| ||||| || || Sbjct 4183708 TTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAG 4183649 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | || ||||||||||| ||||| ||||| | |||||| Sbjct 4183648 GGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4183607 Score = 165 bits (182), Expect = 2e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || ||||| ||||| || || || |||||||||| |||||| | ||||| || Sbjct 4185285 AACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTC 4185226 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || |||||||| |||| || |||||||| ||||| || || |||||||| Sbjct 4185225 GAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTG 4185166 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||| ||||| |||||||| ||| ||| || || || || | ||||| Sbjct 4185165 AATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCTT 4185106 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| |||| ||| || ||||| | |||||| Sbjct 4185105 TCCAGTCAGAGTCTTGACGAAGATCTGCATT 4185075 Score = 163 bits (180), Expect = 6e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||||||||| || || || ||||| |||| ||||| | ||||| || Sbjct 1643885 AACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 1643944 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || |||||||| | || ||| |||||||| ||||| ||||| |||||||| Sbjct 1643945 GAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTG 1644004 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| ||||| ||||| || || || ||||| ||||||| ||||| Sbjct 1644005 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTT 1644064 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || ||||| | |||||| Sbjct 1644065 ACCCGTCAGAGTCTTGACGAAGATTTGCAT 1644094 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || ||||| ||||| || |||||||| | |||||||| |||||||| Sbjct 4185740 ACAAGATGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGACAGAGTTCTACCATCTTCC 4185681 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || |||||||| |||| |||||||||||| || || ||||| || || || Sbjct 4185680 AATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGG 4185621 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || |||||||| ||| ||| || || || || | |||||| Sbjct 4185620 ATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCTTT 4185561 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| ||| || ||||| | |||||| Sbjct 4185560 CCAGTCAGAGTCTTGACGAAGATCTGCATT 4185531 Score = 152 bits (168), Expect = 1e-31 Identities = 169/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 |||||| | | || | ||| ||||||||||| || || || ||||| |||| |||| | Sbjct 4185525 TCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAG-G 4185467 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | ||||| || |||||||| || |||||||| | |||||| || ||||| || || | Sbjct 4185466 TACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCGGGATTC 4185407 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| |||||||| ||||| ||||| |||||||||||||||||| ||| ||||| | Sbjct 4185406 CTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCA 4185347 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| || | || || ||||| | ||||| Sbjct 4185346 AAGTGATGGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4185304 Score = 147 bits (162), Expect = 5e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||| ||||| || || || ||||| || | || || | ||||| || Sbjct 4184555 AACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCCTC 4184496 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| | || ||| || ||||| ||||| ||||| ||||| || Sbjct 4184495 AAGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTG 4184436 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||| ||||| |||||||| ||| || || || || | ||||| Sbjct 4184435 GATCTTGGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTGATAGTCTT 4184376 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || | |||||| ||||| | |||||| Sbjct 4184375 TCCAGTAAGAGTTTTCACGAAAATCTGCATT 4184345 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||||||||| || || || ||||| || | ||||||||| ||||| || |||||| Sbjct 4184776 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCCAGCTGC 4184717 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| |||| || || ||||| || || || || |||||||| || || Sbjct 4184716 TTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTG 4184657 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| ||||| || ||||| ||| ||||||||| | || | |||||||| || Sbjct 4184656 GCTTTGACATTCTCGATTGTGTCAGAAGCTTCCACTTCCAAAGTGATGGTCTTTCCGGTG 4184597 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 4184596 AGGGTCTTGACGAAGATTTGCAT 4184574 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| || ||||| ||||| || ||||| |||| | ||| | || || || Sbjct 4186245 AACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTC 4186186 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| | || || |||||||| || || ||||| |||||||| Sbjct 4186185 GAGCTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 4186126 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| |||||| ||||| |||||||| ||| || ||||| | ||| | ||||| Sbjct 4186125 GATTTTGGCCTTGACATTCTCGATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTCTT 4186066 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | ||| || || || | ||||| Sbjct 4186065 TCCGGTAAGAGTCTTGACAAAGATCTGCAT 4186036 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||||||||| || || || || || ||||| || | || || Sbjct 4184056 TCTGAGGCGGAGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGT 4183997 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || |||||||| |||| || || ||||| || || || Sbjct 4183996 ACGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCC 4183937 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||||||||| || |||||| ||||||||||| || ||| || || || | Sbjct 4183936 CTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTATCGGAAGCCTCGACCTCCAA 4183877 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | |||||||| || | || || ||||| | ||||||| Sbjct 4183876 AGTGATGGTCTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 4183834 Score = 127 bits (140), Expect = 5e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| |||| || |||||||| ||||| || || ||||| || || || Sbjct 4184945 CTTACCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTT 4184886 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| |||||||||||||||||| ||| ||||| ||||| | ||||||||| || Sbjct 4184885 GGCTTTGACATTCTCAATGGTGTCCGAAGCTTCAACTTCGAGGGTGATCGTCTTTCCGGT 4184826 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || || ||||| | |||||| Sbjct 4184825 CAACGTCTTGACGAAGATCTGCATT 4184801 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | |||||| || ||||| || || ||||| |||||||| || || Sbjct 4184206 CTTACCGGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 4184147 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| |||||||||||||| || ||| ||||| || || | || ||||| || Sbjct 4184146 AGCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGT 4184087 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | |||||| Sbjct 4184086 GAGTGTCTTGACGAAGATCTGCATT 4184062 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || ||||| | || |||||| ||||| || || ||||| ||||| || || || Sbjct 4185901 TACCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGG 4185842 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||| |||||||||||||||||| ||| ||||| | || | |||||||| || | Sbjct 4185841 CCTTGACATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTAA 4185782 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 || || ||||| | ||||| Sbjct 4185781 GCGTCTTGACGAAGATCTGCAT 4185760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109435414707983