Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 >seq3 Length=15630833 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | | ||||||||||| || ||| ||||| ||||| ||||||| Sbjct 4184063 TTCCTCCTCTGAGGCGGAGAACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCG 4184004 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | ||| |||| || ||||| |||||||| || || |||| ||||| ||| | | Sbjct 4184003 AGAGGGTACGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 4183944 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | ||||||||||| |||||| ||||| || || || | || ||||| Sbjct 4183943 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTGAC--ATTCTCAATGGTATCGGAAGCCTC 4183886 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || ||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 4183885 GACCTCCAAAGTGATGGTCTTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 4183835 Score = 116 bits (128), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || ||||| ||||| ||||||||||| ||| | |||| ||| Sbjct 4184782 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCC 4184723 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || |||| ||||| ||| | || | ||||||||||| Sbjct 4184722 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGG 4184663 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| |||||| || || || | ||| || || || || | || ||||| | Sbjct 4184662 ATCTTGGCTTTGAC--ATTCTCGATTGTGTCAGAAGCTTCCACTTCCAAAGTGATGGTCT 4184605 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| ||||| ||||| || ||||| |||||| Sbjct 4184604 TTCCGGTGAGGGTCTTGACGAAGATTTGCATA 4184573 Score = 113 bits (124), Expect = 3e-20 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || ||||| | ||| |||| || || || |||||||| || Sbjct 4185266 TCCTTCTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAG 4185207 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | ||||||||||| |||||| |||||| || Sbjct 4185206 ATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTGGCTTTGAC--AT 4185149 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| || || || |||| || ||||| ||||| || |||||||| | Sbjct 4185148 TCTCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGA 4185089 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 4185088 CGAAGATCTGCAT 4185076 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| || | | | ||| |||| || Sbjct 4185512 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCCTCA 4185453 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || | ||||||||| ||| |||| | || |||||||| Sbjct 4185452 AGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGGCGGGATTCCTTCCTTGTCTTGG 4185393 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | || || || || || | || ||||| | Sbjct 4185392 ATTTTGGCTTTGAC--ATTCTCAATGGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCT 4185335 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || || ||||| || |||||||||||| Sbjct 4185334 TTCCGGTAAGCGTCTTGACGAAGATCTGCATA 4185303 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||||||||| ||| | | || || Sbjct 4183815 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCGTCCTCA 4183756 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || |||| ||||||||| | || | || |||||||| Sbjct 4183755 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 4183696 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | || ||||| || || | ||| || |||| Sbjct 4183695 ATTTTGGCTTTGAC--ATTCTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTT 4183638 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || | || || || ||||| ||||| Sbjct 4183637 TTCCTGTCAACGTTTTGACGAAGATTTGCAT 4183607 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| || | | ||| | || || ||||| ||||| || || Sbjct 4186226 TCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAG 4186167 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | || |||||||| || || ||||| || Sbjct 4186166 ATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGAC--AT 4186109 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| ||||| || || | ||| ||||| ||||| || |||||||| | Sbjct 4186108 TCTCGATGGTGTCAGAAGCCTCGACTTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTGA 4186049 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 4186048 CAAAGATCTGCATA 4186035 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| || ||||| || ||| |||| |||| || || ||||| || Sbjct 4185722 TCCTTTTGGATGTTGTAATCCGACAGAGTTCTACCATCTTCCAATTGCTTCCCGGCGAAG 4185663 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||| |||||| | || | || ||||| || ||||| || ||| | Sbjct 4185662 ATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTT 4185603 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || || || |||| || ||||| ||||| || |||||||| || Sbjct 4185602 TCGATGGTGTCAGAAGCTTCGACCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACG 4185543 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 4185542 AAGATCTGCAT 4185532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324620745422472