Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 >seq3 Length=15630833 Score = 127 bits (140), Expect = 2e-24 Identities = 414/639 (65%), Gaps = 8/639 (1%) Strand=Plus/Minus Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 || |||||||| |||||||| | ||| |||| || | |||| || | |||||| | | Sbjct 10143230 GGGCACATCAACGACCAATCTTGATCTTTTTCGACACGTTTCATGAAGAGATCTGGCACC 10143171 Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290 || ||||| | || || || | || | | ||||| || | ||| || ||| Sbjct 10143170 CAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCTTCTGGTCCGGTGTTCTTTCGAAGA 10143111 Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350 ||| ||| || | || || ||||||||||| || || || || || | | | |||||| Sbjct 10143110 GCAACAAACTCGAAGATGTCGGCATGCCATGGCTCCAAGTAGATGGCGAATGCTCCTGGT 10143051 Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410 || || || ||||||||||| | || | ||||| ||||| || || | | |||||| Sbjct 10143050 CGCTTGTTGCCTCCTTGATCAACGTAACGAGCAGTGTTGTTGTAGACACGAAGCATTGGT 10142991 Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT--TCCACTAGCTCTTATAT 48468 | | ||||| ||| | || |||||||| | | || ||| ||| | || | || | Sbjct 10142990 ATGAGTCCATTGGATGTTCCGTTGGTTCCGGCA--ATCACTGAACCAGTTGCACGGATCT 10142933 Query 48469 --TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAG 48526 | | |||| | ||| || || || || | || || || ||||| ||| | || | Sbjct 10142932 TGTGCACATTG--AGACCGATTCCTCCGGCACTCTTTGAGATCAGAGCGCACTGCTTCAA 10142875 Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586 || || || ||||| || || || |||| | || | || || |||||| Sbjct 10142874 AGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAGCATGAAGACAT 10142815 Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646 || ||| | || ||||| || || || | ||||| || ||||| | | | ||| Sbjct 10142814 CTGTGGACGGCATGTTCCAGAGTTGAAAAGAGTTGGCGAAGCATGTGTCATGTACCGCTC 10142755 Query 48647 TGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGA 48706 || | ||| || || || ||||| | | | || || | || || || || | Sbjct 10142754 CGACATCAAGTTGTACGTCTCAATCGCCGCGGCAATGTCGTTTCCGTGGATTCCAATGGC 10142695 Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766 |||||||| ||||| | || ||||| || || | || || || || || | ||| || Sbjct 10142694 GACACGCATCAACATCTGCTGTGGTCTCTCGACGACTTCCTTGTTGATCTTGAGAAGGTA 10142635 Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGA 48805 || || | || || || ||||| ||| |||| || Sbjct 10142634 AGAACGCTCGAGCGTCTTGAATCCAAAGTAGGTGTAAGA 10142596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562085971356360