Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 253 2e-61 seq4 129 5e-24 seq5 107 2e-17 seq1 95.1 1e-13 seq2 93.3 3e-13 >seq3 Length=15630833 Score = 253 bits (280), Expect = 2e-61 Identities = 556/824 (67%), Gaps = 22/824 (3%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGA 551848 ||||||| |||||||||| || || ||||| ||| | ||| || | | | | | | Sbjct 5704346 TGGAGATACTCATCTTGGAGGAGAGGATTTCGATCAAAGAATGCTCCAACACTTTATGAA 5704287 Query 551849 AGATTTTAAACGAAAAAAC--AAAGTTGATCTATCTACATC----TGCCAAAGCTCTTCG 551902 || || ||| |||| | | |||| |||| | | ||| ||||| | || Sbjct 5704286 TGAATTCAAAAGAAAGACCGGAAAGGATATCTCACCAAATCCACGTGCCA------TCCG 5704233 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC-TC--AAAC 551959 ||||| |||| || || ||| | ||||| || | ||||| | || | || || | Sbjct 5704232 ACGTCTCCGAACCGCCTGTGAACGTGCCAAGAGAACACTTTC---TAGTTCATCGGAAGC 5704176 Query 551960 CACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGC 552019 ||| ||||||| ||||| |||| || ||||| |||| | || | | || Sbjct 5704175 CACCGTTGAAGTGGATTCTCTATTCGAAGGAATCGATTTGTGCTCAAAGATCACTCGTGC 5704116 Query 552020 CAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT 552079 ||| || || | ||| ||||||| || ||||||| |||||||||| || | | Sbjct 5704115 TCGATTCGAGGAACTCTGTGCTGATCTATTCCGAAAAACTCTTGAACCAGTTGAGAAGGC 5704056 Query 552080 TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 | | ||||| |||| | || |||||||| | ||||| | || | ||||| ||||| Sbjct 5704055 TCTTCGAGATGCAAAACTCGACAAATCCAAGATTGATGAAGTCGTTTTGGTTGGAGGATC 5703996 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTT-AAGTTCTTATTTCAATGGTAAAAAATTAA 552198 || | |||| || |||| | ||| | ||| ||| |||||| || || || | | Sbjct 5703995 CACTCGTGTTCCAAAGATTCAGAAGATGCTCAAGGACTT-TTTCAACGGAAAGGAACTGA 5703937 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTC 552258 || | ||||||||||| |||||||| | || || ||| ||||||||||| | | Sbjct 5703936 ATTGCTCAATCAATCCAGATGAAGCTGTTGCATTCGGAGCTGCAGTTCAAGCAGCTGTAC 5703877 Query 552259 TTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||||||| | ||| ||| | | || || | | || || |||||| |||| || Sbjct 5703876 TTTCTGGAGTCAAGGATCAAACAATCAAAGATGTATTGCTGGTTGATGTTGCTCCACTGA 5703817 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 |||||| | || |||| ||| ||| | ||||| ||||| || ||| |||| || | | Sbjct 5703816 GTCTTGGAATCGAGACAGCTGGTGGTGTGATGACCAATCTCATTGATCGAAACACCAGAA 5703757 Query 552379 TTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438 |||| || ||| ||| |||| ||| | ||||||||| | | ||| ||| Sbjct 5703756 TTCCAACAAAGGCATCGAAAACATTCACTACTTATGCCGATAATCAACCAGGTGTCTCAA 5703697 Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTT- 552497 ||||| | | ||||||||| | | ||| ||||| ||| ||||| || || Sbjct 5703696 TTCAAGTATACGAAGGAGAACGTGCGATGACTCGGGATAACCATCGTCTTGGAACATTCG 5703637 Query 552498 AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGAT 552557 |||| || || ||||| || ||||| ||||| || || || |||||||| ||||| || Sbjct 5703636 AATTGAGT-GGAATTCCACCAGCTCCACGTGGTGTTCCTCAGATTGAAGTCACTTTTGAC 5703578 Query 552558 ATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||||||||||||||||| |||||||| | ||| |||||||| Sbjct 5703577 ATCGATGCCAATGGAATTCTGAATGTGTCGGCTGAGGATAAATC 5703534 Score = 246 bits (272), Expect = 2e-59 Identities = 558/827 (67%), Gaps = 28/827 (3%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGA 551848 ||||||| |||||||||| || || ||||| ||| | ||| || | | | | | | Sbjct 6136477 TGGAGATACTCATCTTGGAGGAGAGGATTTCGATCAAAGAATGCTCCAACACTTTATGAA 6136418 Query 551849 AGATTTTAAACGAAAAAAC--AAAGTTGATCTATCTACATC----TGCCAAAGCTCTTCG 551902 || || ||| |||| | | |||| |||| | | ||| ||||| | || Sbjct 6136417 TGAGTTCAAAAGAAAGACCGGAAAGGATATCTCACCAAATCCACGTGCCA------TCCG 6136364 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC-TC--AAAC 551959 ||||| |||| || || ||| | ||||| || | ||||| | || | || || | Sbjct 6136363 ACGTCTCCGAACCGCCTGTGAACGTGCCAAGAGAACACTTTC---TAGTTCATCGGAAGC 6136307 Query 551960 CACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGC 552019 |||| ||||||| ||||| |||| || ||||| |||| | || | | || Sbjct 6136306 CACTGTTGAAGTGGATTCTCTATTCGAAGGAATCGATTTGTGCTCAAAGATCACTCGTGC 6136247 Query 552020 CAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT 552079 ||| || || | ||| ||||||| || ||||||| |||||||||| || | | Sbjct 6136246 TCGATTCGAGGAACTCTGTGCTGATCTATTCCGAAAAACTCTTGAACCAGTTGAGAAGGC 6136187 Query 552080 TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 | | ||||| |||| | || |||||||| | |||| | || | ||||| ||||| Sbjct 6136186 TCTTCGAGATGCAAAACTCGACAAATCCAAGATTGATGAGGTCGTTTTGGTTGGAGGATC 6136127 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTT-AAGTTCTTATTTCAATGGTAAAAAATTAA 552198 || | |||| || |||| | ||| | ||| ||| |||||| || || || | | Sbjct 6136126 CACTCGTGTTCCAAAGATTCAGAAGATGCTCAAGGACTT-TTTCAACGGAAAGGAACTGA 6136068 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTC 552258 || | ||||||||||| |||||||| | || || ||| ||||||||||| | | Sbjct 6136067 ATTGCTCAATCAATCCAGATGAAGCTGTTGCATTCGGAGCTGCAGTTCAAGCAGCTGTAC 6136008 Query 552259 TTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||||||| | ||| ||| | | || || | | || || |||||| |||| | Sbjct 6136007 TTTCTGGAGTCAAGGATCAAACAATCAAAGATGTATTGCTGGTTGATGTTGCTCCATTGA 6135948 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 |||||| | || |||| ||| ||| | ||||| ||||| || ||| |||| || | | Sbjct 6135947 GTCTTGGAATCGAGACAGCTGGTGGTGTGATGACCAATCTCATTGATCGAAACACCAGAA 6135888 Query 552379 TTCCTTGTAAAAAATC-TCGTGTATTTTC--TACGTATTCAGATAATCAAACTGCTGTTA 552435 |||| | ||| | ||| | |||| ||| ||| | ||||||||| | | || Sbjct 6135887 TTCCA---ACAAAGGCATCGAAAACTTTCACTACTTATGCCGATAATCAACCAGGAGTCT 6135831 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 |||||||| | | ||||||||| | | ||| ||||| ||| ||||| || | Sbjct 6135830 CAATTCAAGTATACGAAGGAGAACGTGCGATGACTCGGGATAACCATCGTCTTGGAACAT 6135771 Query 552496 TT-AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTC 552554 | |||| || || ||||| || ||||| ||||| || || || |||||||| ||||| Sbjct 6135770 TCGAATTGAGT-GGAATTCCACCAGCTCCACGTGGTGTTCCTCAGATTGAAGTCACTTTT 6135712 Query 552555 GATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 || |||||||||||||||||| |||||||| | ||| |||||||| Sbjct 6135711 GACATCGATGCCAATGGAATTCTGAATGTGTCGGCTGAGGATAAATC 6135665 Score = 246 bits (272), Expect = 2e-59 Identities = 558/827 (67%), Gaps = 28/827 (3%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGA 551848 ||||||| |||||||||| || || ||||| ||| | ||| || | | | | | | Sbjct 6304591 TGGAGATACTCATCTTGGAGGAGAGGATTTCGATCAAAGAATGCTCCAACACTTTATGAA 6304532 Query 551849 AGATTTTAAACGAAAAAAC--AAAGTTGATCTATCTACATC----TGCCAAAGCTCTTCG 551902 || || ||| |||| | | |||| |||| | | ||| ||||| | || Sbjct 6304531 TGAGTTCAAAAGAAAGACCGGAAAGGATATCTCACCAAATCCACGTGCCA------TCCG 6304478 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC-TC--AAAC 551959 ||||| |||| || || ||| | ||||| || | ||||| | || | || || | Sbjct 6304477 ACGTCTCCGAACCGCCTGTGAACGTGCCAAGAGAACACTTTC---TAGTTCATCGGAAGC 6304421 Query 551960 CACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGC 552019 |||| ||||||| ||||| |||| || ||||| |||| | || | | || Sbjct 6304420 CACTGTTGAAGTGGATTCTCTATTCGAAGGAATCGATTTGTGCTCAAAGATCACTCGTGC 6304361 Query 552020 CAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT 552079 ||| || || | ||| ||||||| || ||||||| |||||||||| || | | Sbjct 6304360 TCGATTCGAGGAACTCTGTGCTGATCTATTCCGAAAAACTCTTGAACCAGTTGAGAAGGC 6304301 Query 552080 TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 | | ||||| |||| | || |||||||| | |||| | || | ||||| ||||| Sbjct 6304300 TCTTCGAGATGCAAAACTCGACAAATCCAAGATTGATGAGGTCGTTTTGGTTGGAGGATC 6304241 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTT-AAGTTCTTATTTCAATGGTAAAAAATTAA 552198 || | |||| || |||| | ||| | ||| ||| |||||| || || || | | Sbjct 6304240 CACTCGTGTTCCAAAGATTCAGAAGATGCTCAAGGACTT-TTTCAACGGAAAGGAACTGA 6304182 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTC 552258 || | ||||||||||| |||||||| | || || ||| ||||||||||| | | Sbjct 6304181 ATTGCTCAATCAATCCAGATGAAGCTGTTGCATTCGGAGCTGCAGTTCAAGCAGCTGTAC 6304122 Query 552259 TTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||||||| | ||| ||| | | || || | | || || |||||| |||| | Sbjct 6304121 TTTCTGGAGTCAAGGATCAAACAATCAAAGATGTATTGCTGGTTGATGTTGCTCCATTGA 6304062 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 |||||| | || |||| ||| ||| | ||||| ||||| || ||| |||| || | | Sbjct 6304061 GTCTTGGAATCGAGACAGCTGGTGGTGTGATGACCAATCTCATTGATCGAAACACCAGAA 6304002 Query 552379 TTCCTTGTAAAAAATC-TCGTGTATTTTC--TACGTATTCAGATAATCAAACTGCTGTTA 552435 |||| | ||| | ||| | |||| ||| ||| | ||||||||| | | || Sbjct 6304001 TTCCA---ACAAAGGCATCGAAAACTTTCACTACTTATGCCGATAATCAACCAGGAGTCT 6303945 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 |||||||| | | ||||||||| | | ||| ||||| ||| ||||| || | Sbjct 6303944 CAATTCAAGTATACGAAGGAGAACGTGCGATGACTCGGGATAACCATCGTCTTGGAACAT 6303885 Query 552496 TT-AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTC 552554 | |||| || || ||||| || ||||| ||||| || || || |||||||| ||||| Sbjct 6303884 TCGAATTGAGT-GGAATTCCACCAGCTCCACGTGGTGTTCCTCAGATTGAAGTCACTTTT 6303826 Query 552555 GATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 || |||||||||||||||||| |||||||| | ||| |||||||| Sbjct 6303825 GACATCGATGCCAATGGAATTCTGAATGTGTCGGCTGAGGATAAATC 6303779 Score = 197 bits (218), Expect = 1e-44 Identities = 371/536 (69%), Gaps = 12/536 (2%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||||||| ||||||| |||| |||| ||| || || || |||||| | ||||| Sbjct 5704942 GTTGAAATCCTTGCCAACTCAGAAGGAAACAAAACAACGCCTTCATATGTTGCATTCACT 5704883 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| || ||||| ||||| |||||| ||||||| || ||||||| ||| Sbjct 5704882 GATACAGAACGATTGGTTGGAGATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAAT 5704823 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| ||||| || || |||||| ||||| |||| || ||||| || Sbjct 5704822 ACAGTATTCGATGCAAAACGATTGATCGGAAGACGTTTTGATGAAGAAACAGTTCAATCA 5704763 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCT---GGAAAACCTTATATTGAA 550288 || || |||||||| || | || || | |||||||| || ||| Sbjct 5704762 GACTGCAAACATTGGCCATTTGGA---GTCAAAGGAAAACAAGGAAAACCAGTGATCGAA 5704706 Query 550289 GCTACTCATGAA-GGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | ||||| ||| | ||| || |||||| |||| || | ||||| | Sbjct 5704705 G-TGGAAATGAAAGGAGAAAGGAGACAGTTCAATCCAGAAGAAATCTCGGCAATGGTACT 5704647 Query 550348 AATGAAAATGAAACAAACAGCCAGTG-CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 ||||||||| |||| || || | | | | || || | ||| | ||||||||| | Sbjct 5704646 TCAGAAAATGAAGGAAACTGC-AGAGACATACCTGGGACATGCAGTCAAGGATGCAGTGA 5704588 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | |||||||| ||||| || |||||| || | ||||| || |||||||| | | Sbjct 5704587 TTACTGTACCTGCATACTTCAATGACAGTCAGAGACAAGCAACCAAAGATGCAGCTACCA 5704528 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||||||||| |||| | || || ||||| ||||| ||||| ||||| ||||| |||| Sbjct 5704527 TTGCTGGACTCAATGCCATCCGAATCATCAACGAACCGACTGCAGCTGCTCTTGCTTATG 5704468 Query 550527 GACTTGATAAACATAATGA-TCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || | |||||| ||| | | |||| |||||||| ||||||||| |||||| Sbjct 5704467 GATTGGATAAA-GGAATCAGTGAAGAGAAGAATGTACTGATCTTTGATCTTGGAGG 5704413 Score = 194 bits (214), Expect = 1e-43 Identities = 370/536 (69%), Gaps = 12/536 (2%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| ||||||| |||| |||| ||| || || || |||||| | ||||| Sbjct 6305187 GTCGAAATCCTTGCCAACTCAGAAGGAAACAAAACAACGCCTTCATATGTTGCATTCACT 6305128 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| || ||||| ||||| |||||| ||||||| || ||||||| || Sbjct 6305127 GATACAGAACGATTGGTTGGAGATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAAC 6305068 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| ||||| || ||||||||| ||||| |||| || ||||| || Sbjct 6305067 ACAGTATTCGATGCAAAACGATTGATTGGAAGACGTTTTGATGAAGAAACAGTTCAATCA 6305008 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCT---GGAAAACCTTATATTGAA 550288 || || |||||||| || | || || | |||||||| || ||| Sbjct 6305007 GACTGCAAACATTGGCCATTTGGA---GTCAAAGGAAAACAAGGAAAACCAGTGATCGAA 6304951 Query 550289 GCTACTCATGAA-GGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | ||||| ||| | ||| || |||||| |||| ||| | ||||| | Sbjct 6304950 G-TGGAAATGAAAGGAGAAAAGAGACAGTTCAATCCAGAAGAAATCTCAGCAATGGTACT 6304892 Query 550348 AATGAAAATGAAACAAACAGCCAGTG-CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 ||||||||| |||| || || | | | | || || | ||| | ||||||||| | Sbjct 6304891 TCAGAAAATGAAGGAAACTGC-AGAGACATACCTGGGACATGCAGTCAAGGATGCAGTGA 6304833 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | |||||||| ||||| || |||||| || | ||||| || |||||||| | | Sbjct 6304832 TTACTGTACCTGCATACTTCAATGACAGTCAGAGACAAGCAACCAAAGATGCAGCTACCA 6304773 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||||||||| |||| | || || ||||||||||| ||||| ||||| ||||| |||| Sbjct 6304772 TTGCTGGACTCAATGCCATCCGAATCATCAATGAACCGACTGCAGCTGCTCTTGCTTATG 6304713 Query 550527 GACTTGATAAACATAATGA-TCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || | |||||| ||| | | |||| ||||| | ||||||||| |||||| Sbjct 6304712 GATTGGATAAA-GGAATCAGTGAAGAGAAGAATGTTTTGATCTTTGATCTTGGAGG 6304658 Score = 188 bits (208), Expect = 6e-42 Identities = 369/536 (69%), Gaps = 12/536 (2%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| ||||||| |||| |||| ||| || || || |||||| | ||||| Sbjct 6137073 GTCGAAATCCTTGCCAACTCAGAAGGAAACAAAACAACGCCTTCATATGTTGCATTCACT 6137014 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| || ||||| ||||| |||||| ||||||| || ||||||| || Sbjct 6137013 GATACAGAACGATTGGTTGGAGATGCGGCAAAAGATCAAGCAGCTCGTAATCCAGAGAAC 6136954 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || ||||| ||||| || || |||||| ||||| |||| || ||||| || Sbjct 6136953 ACAGTATTCGATGCAAAACGATTGATCGGAAGACGTTTTGATGAAGAAACAGTTCAATCA 6136894 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCT---GGAAAACCTTATATTGAA 550288 || || |||||||| || | || || | |||||||| || ||| Sbjct 6136893 GACTGCAAACATTGGCCATTTGGA---GTCAAAGGAAAACAAGGAAAACCAGTGATCGAA 6136837 Query 550289 GCTACTCATGAA-GGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | ||||| ||| | ||| || |||||| |||| ||| | ||||| | Sbjct 6136836 G-TGGAAATGAAAGGAGAAAAGAGACAGTTCAATCCAGAAGAAATCTCAGCAATGGTACT 6136778 Query 550348 AATGAAAATGAAACAAACAGCCAGTG-CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 ||||||||| |||| || || | | | | || || | ||| | ||||||||| | Sbjct 6136777 TCAGAAAATGAAGGAAACTGC-AGAGACATACCTGGGACATGCAGTCAAGGATGCAGTGA 6136719 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | |||||||| ||||| || |||||| || | ||||| || |||||||| | | Sbjct 6136718 TTACTGTACCTGCATACTTCAATGACAGTCAGAGACAAGCAACCAAAGATGCAGCTACCA 6136659 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||||||||| |||| | || || ||||||||||| ||||| ||||| ||||| |||| Sbjct 6136658 TTGCTGGACTCAATGCCATCCGAATCATCAATGAACCGACTGCAGCTGCTCTTGCTTATG 6136599 Query 550527 GACTTGATAAACATAATGA-TCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || | |||||| ||| | | |||| ||||| | ||||||||| |||||| Sbjct 6136598 GATTGGATAAA-GGAATCAGTGAAGAGAAGAATGTTTTGATCTTTGATCTTGGAGG 6136544 Score = 125 bits (138), Expect = 6e-23 Identities = 328/496 (66%), Gaps = 22/496 (4%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| ||| |||| || |||| |||| ||| || ||||| |||||| | ||||| Sbjct 8108626 GTTGAGATTCTTGCAAACTCGGAAGGAAACAAAACCACACCATCGTATGTTGCATTCACA 8108567 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||| | ||||| ||| |||| ||| |||| ||| | | ||||| || Sbjct 8108566 GACACTGAGAGACTCGTTGGAGATTCAGCCAAAGATCAGGCCGCCCGAAATCCAGAGCAT 8108507 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| | || ||||| || || | ||||||||| |||| | || || || ||||||| | Sbjct 8108506 ACTGTATTCGATGCAAAGCGACTGATTGGAAGACGTTTCGACGAGTCAACAGTTCAGGAA 8108447 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTC------TGGAAAACCTTATATT 550285 ||| ||||||||||| ||| | ||| || || || ||||| | Sbjct 8108446 GATTGCAAGCATTGGCCGTTC---ACTGTGAA---ATCAAAGCAAGGGAAACCAGTGGTG 8108393 Query 550286 GAAGCT--ACTCATGAAGGATCTGTTAAA---CAATTTTCACCAGAACAAATTTCATCTA 550340 |||| | | ||| ||||| | ||| ||||| ||||| |||| ||| | | Sbjct 8108392 GAAGTTGAAGTCA--AAGGA---GAGAAACGTCAATTCAATCCAGAGGAAATCTCAGCAA 8108338 Query 550341 TGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATG 550400 || | | ||| ||||| |||| || | | |||| || | ||| | |||| Sbjct 8108337 TGATCCTTCAGAAGATGAAGGAAACTGCGGAGACGTACCTTGGACACGCAGTCAAAGATG 8108278 Query 550401 CAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTG 550460 | || || || |||||||||||||| || || || | ||||| || || ||||| | Sbjct 8108277 CTGTTATTACGGTACCAGCATATTTCAACGATAGTCAGAGACAAGCCACCAAGGATGCAG 8108218 Query 550461 GACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTG 550520 || |||||||| |||| | || || |||||||| || ||||| ||||| || | Sbjct 8108217 CTACCATCGCTGGACTCAATGCCATCCGAATCATCAATGAGCCAACTGCAGCTGCCCTCG 8108158 Query 550521 CATATGGACTTGATAA 550536 | || ||| | || || Sbjct 8108157 CTTACGGATTGGACAA 8108142 Score = 100 bits (110), Expect = 2e-15 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||||||||| || | ||| || || ||| | ||| || ||||| || | |||| Sbjct 4184794 CTGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGG--ATGTTGTAGTCCGAAAGAG 4184737 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 ||||| ||| || || || |||||||| || || ||||| |||||||| || || |||| Sbjct 4184736 TTCTTCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTC 4184677 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 | || || ||||| || || ||| || ||| ||||| |||| | | || ||| Sbjct 4184676 CCTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATTGTGTCAG-AAGCTTCCACTTCC 4184618 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||| | || || || || || || || ||||| ||||||||| Sbjct 4184617 AAAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATA 4184573 Score = 98.7 bits (108), Expect = 8e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || ||||| || | ||||| | | ||| || ||||| |||||||| || || | |||| Sbjct 1643913 ATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTT 1643972 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| || || ||||||||||| || ||||| || || || || ||| || ||| Sbjct 1643973 TGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTA 1644032 Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | | | | | |||||| |||| || ||||| || ||||| || ||||| ||||| Sbjct 1644033 TCGGAG-GCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTG 1644091 Query 563472 CAT 563474 ||| Sbjct 1644092 CAT 1644094 Score = 98.7 bits (108), Expect = 8e-15 Identities = 160/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTA-CAAGATGA-AGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||||||||| | |||| || || | ||| | ||| || ||||| || | |||| Sbjct 4183827 CTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGG--ATGTTGTAGTCCGAAAGAG 4183770 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 ||||| || ||||| || |||||||| || || ||||| ||||| || || || |||| Sbjct 4183769 TTCTTCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTC 4183710 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 |||| || ||||| ||||| ||| || ||| || ||||| | | | || || Sbjct 4183709 CTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATC-GGAAGCCTCCACCTCC 4183651 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | |||||| || || | ||||| ||||| |||||||| Sbjct 4183650 AGGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4183607 Score = 96.9 bits (106), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || || ||||| ||| || || || ||||| || | || || | Sbjct 4184563 AGACGAAGAACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGA 4184504 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| ||||| || || ||||| || || | |||||||||||| || ||||||||||| Sbjct 4184503 CCATCCTCAAGCTGCTTCCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCC 4184444 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || || || || || ||| || ||||| || || | | | || ||||| Sbjct 4184443 TTGTCCTGGATCTTGGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCTAGAGTG 4184384 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||| || |||||||||||||| |||||||| ||||| Sbjct 4184383 ATAGTCTTTCCAGTAAGAGTTTTCACGAAAATCTGCAT 4184346 Score = 96.9 bits (106), Expect = 3e-14 Identities = 93/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 552486 CTTGGTACTTTT-AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGA 552544 ||||| || || |||| || || ||||| || ||||| ||||| || || || ||||| Sbjct 5706638 CTTGGAACATTCGAATTGAGT-GGAATTCCACCAGCTCCACGTGGTGTTCCTCAGATTGA 5706696 Query 552545 AGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||| ||||| || |||||||||||||||||| |||||||| | ||| |||||||| Sbjct 5706697 AGTCACTTTTGACATCGATGCCAATGGAATTCTGAATGTGTCGGCTGAGGATAAATC 5706753 Score = 95.1 bits (104), Expect = 1e-13 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 930661 TAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTA 930720 || |||||||||| || |||||||| ||||| ||||||||| | ||||||||||| |||| Sbjct 5767362 TAGTTGATTTTTCGTCGCCAAATATCGCCAAGGAAATGCATGTAGGACATTTGCGATCTA 5767421 Query 930721 CCATTATTGGAGAATCTTTATGTAG 930745 | || |||||||| ||| | ||||| Sbjct 5767422 CAATCATTGGAGATTCTATTTGTAG 5767446 >seq4 Length=19682253 Score = 129 bits (142), Expect = 5e-24 Identities = 194/273 (71%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 550314 AATTTTCAC--CAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAG 550371 ||| ||||| ||||| |||| || || |||||| | |||| ||||| |||| ||| Sbjct 531449 AATCTTCACTCCAGAAGAAATCTCCTCCATGGTTCTGCTGAAGATGAAGGAAACCGCCGA 531508 Query 550372 TGCTTTTGTTGGTCAAGAA--GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAAT 550429 ||||| | || ||| | || | ||| || || || || || ||||| || || || Sbjct 531509 GGCTTTCCTCGG--AAGCACCGTCAAGGACGCCGTTATCACCGTTCCAGCCTACTTCAAC 531566 Query 550430 GACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGT 550489 || ||||| ||||||||||| || ||||| ||| ||| | ||||| || ||||||||| Sbjct 531567 GATTCACAGCGTCAAGCTACCAAGGATGCCGGAGCTATCTCCGGACTCAACGTTCTTCGT 531626 Query 550490 ATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAA 550549 || ||||| || || || ||||| || | || || ||||| || || | | | | Sbjct 531627 ATCATCAACGAGCCAACCGCTGCCGCTATCGCCTACGGACTCGACAAGAAGGGAGCTGGA 531686 Query 550550 GAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 |||| || || ||||| || ||| ||||||| Sbjct 531687 GAACGCAACGTTCTCATTTTCGATCTTGGAGGT 531719 >seq5 Length=22087214 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| ||||| || || || || || ||||||||||| || || |||||||||| ||| Sbjct 2324095 ACTGTTCCAGCCTACTTCAACGATTCTCAACGTCAAGCCACCAAGGATGCTGGACAAATT 2324154 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||||| || ||||||||| | ||||| || || ||||| || || ||||| || ||| Sbjct 2324155 TCTGGACTCAACGTTCTTCGTGTGATCAACGAGCCAACTGCCGCCGCTCTTGCTTACGGA 2324214 Query 550529 CTTGATAAA 550537 | || ||| Sbjct 2324215 TTAGACAAA 2324223 >seq1 Length=16658584 Score = 95.1 bits (104), Expect = 1e-13 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||||||||| || || ||||| |||||||| ||||| |||||||||||||| || || Sbjct 1912856 GGATGCAGTGATTACAGTACCCGCATATTTCAATGATAGCCAACGTCAAGCTACGAAGGA 1912797 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 || | |||||||| || || | |||| || |||||||| || ||||| || || Sbjct 1912796 CGCAGCTACCATTGCTGGTCTCAACGCGATTCGAATCATCAATGAGCCAACTGCAGCCGC 1912737 Query 550516 ACTTGCATATGGACTTGATAAA 550537 | | || |||||| | || ||| Sbjct 1912736 ATTGGCTTATGGATTAGACAAA 1912715 >seq2 Length=17838644 Score = 93.3 bits (102), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 |||||| || |||| ||||||| | | || ||||| |||| || | | || Sbjct 6214654 CCAGAAGAAGTTTCGGCTATGGTCCTCACTAAGATGAAGCAAATTGCTGAATCCTACCTT 6214595 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || || ||||| | | | || || | || || ||||| || || ||||| | || | Sbjct 6214594 GGACACGAAGTGAAGAACGCTGTCGTCACCGTTCCAGCTTACTTCAATGATGCCCAGAGA 6214535 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| || ||||| || ||| ||| ||||||||||| ||| | | || ||||| ||| Sbjct 6214534 CAAGCCACCAAAGACGCCGGAACTATCGCTGGACTTAACGTTGTCAGAATCATCAACGAA 6214475 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTG 550532 || ||||||||||| |||| || || |||| Sbjct 6214474 CCAACTGCTGCTGCTATTGCTTACGG-CTTG 6214445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029124178227010