Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq1391 93.3 1e-14 >seq1391 Length=31949 Score = 93.3 bits (102), Expect = 1e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 19336 ACACCTGGTGCCAACATCTGGTACCTGAAGGCTGCGCTTGATCATATGATCTTTAACCAG 19395 || || ||||||||| ||||||| |||| || ||||| ||| | ||||| ||||| Sbjct 8088 ACCCCAGGTGCCAACCTCTGGTATGCCAAGGGCGCTCTTGACCATCTCATCTTCCACCAG 8029 Query 19396 ATGCAGGAGTATTTTTCCCCTGGCTATCTGCGCAAGATGGAGCAGCGTTCGAAGAAAGAA 19455 ||||||||||||| || || |||||||| ||||||||| ||| || ||||||| Sbjct 8028 CTGCAGGAGTATTTCTCGCCGGGCTATCTCCGCAAGATGAAGCGCCGCAGCGAGAAAGAG 7969 Query 19456 TTTAACCAGACATACTGGTGG 19476 || |||| || |||||| Sbjct 7968 TTCGGGCAGAAGTATTGGTGG 7948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123662428687548