Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq1577 107 7e-19 seq1976 84.2 8e-12 >seq1577 Length=16492 Score = 107 bits (118), Expect = 7e-19 Identities = 247/368 (67%), Gaps = 8/368 (2%) Strand=Plus/Plus Query 5264 TCCGCCTGGCGATCCTTCAGGCGCAACTGGCCGAGTTCCCGGCCAGCGGTATCGTGCTCA 5323 |||| ||||| || || ||||| || || || | ||||| |||||||||||| | Sbjct 2775 TCCGTCTGGCAATTCTACAGGCCTCCCTCGCAGAATATCCGGCTGACGGTATCGTGCTTA 2834 Query 5324 ACCCCATCGACTGGGCGCTGATCGAGCTGACCAAGGACGCCGAGAACCGTTACATCATCG 5383 |||| | ||||||||| ||||| ||||||||||| | ||| |||| |||||| ||| Sbjct 2835 ACCCTACCGACTGGGCAGATATCGAACTGACCAAGGATGGTGAGGACCGCTACATCTTCG 2894 Query 5384 GCAGCCCG---CAGAACGGCACCACTCCGACCCTCTGGCGTCTGCCGGTGGTGGAAACCC 5440 || | ||| | || |||| |||||| | | ||||| | | || | Sbjct 2895 CCAATGTGATCCAGCTTG---CCGGTCCGCAGCTCTGGGGACGTCCGGTCATCGCTACTC 2951 Query 5441 AGGCCATCACTCAGGACGAGTTCCTGACCGGTGCGTTCTCTCTCGGCGCCCAGATCTTCG 5500 |||| || || ||| || ||||| ||||| ||| | | || |||||| | Sbjct 2952 AGGCGATGGATCTGGATGAATTCCTTGTTGGTGCATTCCGGATGGCTGCAAAGATCTGGG 3011 Query 5501 ACCGCATGGACATCGAGGTTCTGGTTTCCACCG-AGAACGACAAGGACTTCGAGAACAAC 5559 |||| ||||| | || ||||| | || | | ||| || | | |||||| || ||| Sbjct 3012 ACCGAATGGATACTGAAGTTCTAATCTCGTCGGAAGATCG-CGACAACTTCGTCAAAAAC 3070 Query 5560 ATGGTCACCATCCGCGCTGAGGAGCGGCTGGCCTTCGCGGTCTATCGCCCCGAGGCTTTC 5619 ||| ||||| | || || || |||| || ||| |||| ||| | ||||| | ||| | Sbjct 3071 ATGCTCACCGTTCGTGCAGAAAAGCGTCTCGCCCTCGCAGTCAAGCGCCCTGGTGCTCTT 3130 Query 5620 GTGACTGG 5627 ||||| || Sbjct 3131 GTGACCGG 3138 >seq1976 Length=10667 Score = 84.2 bits (92), Expect = 8e-12 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 3806 GATGTGACCGTGAACATCAACAGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTAC 3865 |||||||| || ||| |||| || || || | | ||| | || ||||||| ||| Sbjct 5589 GATGTGACTGTCAACGTCAATTCACCGGGTGGGAATTTCTTCAACGGGTTGGCCATCTAC 5530 Query 3866 AACCTGCTGCGCGAGCACAAGGGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCT 3925 || ||||||| | |||| || || || ||| | || | ||||| |||| | ||| Sbjct 5529 AATTTGCTGCGTGCGCACCCGGCGAAAGTAACGATCAATGTGATCGGAATGGCGGGTTCT 5470 Query 3926 GCCGCCTCTTTCATCGCCATGGCGGGGGATGAAATC 3961 || || ||| | ||||||||||| |||||||||||| Sbjct 5469 GCGGCATCTGTAATCGCCATGGCTGGGGATGAAATC 5434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172748534780468