Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq1384 102 1e-16 >seq1384 Length=26501 Score = 102 bits (112), Expect = 1e-16 Identities = 246/370 (66%), Gaps = 13/370 (4%) Strand=Plus/Plus Query 22990 AAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTA 23049 |||||||| || || || ||||| |||||||| | || || || ||||| Sbjct 1524 AAGAACAGCATCTGCGCCACGCCTTCATTGGCGTAGATGCGCGCTGGCAGCGGCGTGGTG 1583 Query 23050 TTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACG 23109 ||| || ||||| || | ||||| ||| || || |||||||| || ||||| ||| Sbjct 1584 TTGCTGAATTCCAGGGTGACGTGGCCTTCCCACTCCGGCTCCAGCGGGGTCACGTTGACG 1643 Query 23110 ATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGA 23169 ||||||||||| ||||| || || ||||| ||||| | || | ||| ||||| Sbjct 1644 ATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCACACCACCAGGGTGTCGCGCGGG 1703 Query 23170 ATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGATCAGGCCT 23229 ||| ||||| ||| ||| |||| ||||| ||||| ||||| ||||| | Sbjct 1704 ATGCGGAAGTACTCCACGGTGCGCGCCAACGCGAAGCTGTTGGGCGGGATGATGCATTCA 1763 Query 23230 TGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGG--TGAAATTCTTTGGATCGA 23287 | |||| ||| | | ||||| || | ||| ||| | ||| ||||||| Sbjct 1764 TCGCCG------ACGATATCC---ACGAAGCTGCC--CGGATCGAAGTGCTTGGGATCGA 1812 Query 23288 CAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGC 23347 | | | || | ||| ||||| |||||||| ||| ||| || | ||||||| Sbjct 1813 CGATGGTCGAGTTGATGTTAGTGAACACCTTGAACTCGCGCGAGCAGCGCACGTCGTAGC 1872 Query 23348 CGTAGCTGGA 23357 |||||||||| Sbjct 1873 CGTAGCTGGA 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897557146479920