Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq365 82.4 2e-11 >seq365 Length=3923 Score = 82.4 bits (90), Expect = 2e-11 Identities = 203/303 (67%), Gaps = 14/303 (5%) Strand=Plus/Plus Query 25977 CACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCC---CACTTGCGGGTTTTCAG 26033 ||| ||||| ||| ||||||| || ||||| || ||| ||||||||||| | ||| Sbjct 965 CACGATTTCGGTGCTGTAGCGGTCGTTGCCGTTCTGGTCCTGCCACTTGCGGGTCTGCAG 1024 Query 26034 TTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTAC 26093 | || || || ||||||| | ||| || ||||| |||| | || | || || | Sbjct 1025 TGCGCCTTCGATATAAACCTTGGCACCCTTTTTCAGATACTGCTCGGCAACCTTGGCAAG 1084 Query 26094 CTT---GCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTG 26150 || | || | || |||| |||||||| || || || |||||||||||| Sbjct 1085 ATTTTCGTTGAAAATGACAACGCTGTGCCATTCGGTACGATCCTTGCGTTCGCCGGTCTG 1144 Query 26151 CTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGA-CTG--CGCCGCCATT 26207 ||| ||||||||| || ||||| | | | ||||||| ||| |||| ||| Sbjct 1145 ACGGTCGCGCCAGCTTTCCGAAGTCGCAATGCGCAGATTGGCGATCTGATCGCCTGAATT 1204 Query 26208 -AGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTA 26266 |||| ||| || || |||||| || || || ||||| || || ||||| || | Sbjct 1205 GAGGC----GACGAATTTCAGGATCGGCACCAAGATTGCCGACCAGAATGACTTTGTTGA 1260 Query 26267 CGC 26269 ||| Sbjct 1261 CGC 1263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159811433937334